Data pre-processing and analysis scripts for the article "Immune microniches shape intestinal Treg function"
Sequencing data for scRNA-seq, scTCR-seq and Visium data is available at https://www.ebi.ac.uk/ena/browser/view/PRJEB57700. Project: PRJEB57700
Processed data of scRNA-seq and Visium is available for browsing gene expression and downloading in https://treg-gut-niches.cellgeni.sanger.ac.uk/.
Link to the article: https://www.nature.com/articles/s41586-024-07251-0