01_Introduction.md

SEMINAR 1: Introduction to Nextflow and nf-core

Video link: https://vimeo.com/806642995

Seminar 1 slides

Presenter: Chris Hakkart, Patricia

Links/Resources used:

1. Nextflow
   1. Training material: https://training.nextflow.io/basic_training/
      1. Gitpod link: https://gitpod.io/#https://github.com/nextflow-io/training
   2. Reference docs: https://nextflow.io/docs/latest/index.html
   3. Nextflow patterns: https://nextflow-io.github.io/patterns/index.html
2. nf-core
   1. Website and important sections
      1. Main website: https://nf-co.re
      2. Join nf-core (especially Slack): https://nf-co.re/join
      3. Publications: https://nf-co.re/publications
      4. Mentorship program: https://nf-co.re/mentorships
      5. Docs: https://nf-co.re/docs
   2. Main projects
      1. Tools: https://nf-co.re/tools/
      2. Pipelines: https://nf-co.re/pipelines
      3. Modules and subworkflows : https://nf-co.re/modules
   3. Training material
      1. Gitpod - https://www.gitpod.io/#https://github.com/nf-core/tools
      2. Docs page - https://nf-co.re/docs/contributing/tutorials/creating_with_nf_core
   4. nf-core/rnaseq pipeline
      1. Main page: https://nf-co.re/rnaseq
      2. Usage: https://nf-co.re/rnaseq/3.11.1/usage
      3. Parameters: https://nf-co.re/rnaseq/3.11.1/parameters