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MyForm.h
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MyForm.h
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#pragma once
#include "PCIE.h"
#include "converter.h"
#include <string>
#include <iostream>
#include <fstream>
namespace app {
using namespace System;
using namespace System::ComponentModel;
using namespace System::Collections;
using namespace System::Windows::Forms;
using namespace System::Data;
using namespace System::Drawing;
using namespace std;
using System::Runtime::InteropServices::Marshal;
/// <summary>
/// Summary for MyForm
/// </summary>
public ref class MyForm : public System::Windows::Forms::Form
{
public:
MyForm(void)
{
InitializeComponent();
//
//TODO: Add the constructor code here
//
lib_handle = PCIE_Load();
if (!lib_handle){
MessageBox::Show("PCIE_Load failed!", "PCIE_Load failed!", MessageBoxButtons::OK, MessageBoxIcon::Error);
}
else
{
outTextStatus->Text = "PCIE Load successful";
}
//binh hPCIE = PCIE_Open(DEFAULT_PCIE_VID, DEFAULT_PCIE_DID, 0);
if (!hPCIE){
MessageBox::Show("PCIE_Open failed!", "PCIE_Load failed!",
MessageBoxButtons::OK, MessageBoxIcon::Error);
//binh PCIE_Close(hPCIE);
//button1->Enabled = false;
}
//file handling
ptr_file = new ifstream();
ptr_file->open(DATABASE_FILENAME);
cout << "PCIE_MEM_QUERY_ADDR " << PCIE_MEM_QUERY_ADDR << endl;
cout << "PCIE_MEM_SUBJECT_ADDR " << PCIE_MEM_SUBJECT_ADDR << endl;
cout << "PCIE_MEM_SCORE_ADDR " << PCIE_MEM_SCORE_ADDR << endl;
}
protected:
/// <summary>
/// Clean up any resources being used.
/// </summary>
~MyForm()
{
if (components)
{
delete components;
}
}
private: System::Windows::Forms::Button^ button1;
private: System::Windows::Forms::StatusStrip^ outStatus;
private: System::Windows::Forms::TextBox^ inQuery;
private: System::Windows::Forms::RichTextBox^ outSubject;
private: System::Windows::Forms::Button^ button2;
private: System::Windows::Forms::Button^ button3;
private: System::Windows::Forms::Label^ outSubjectID;
private: System::Windows::Forms::Label^ outSubjectLength;
private: System::Windows::Forms::ToolStripStatusLabel^ outTextStatus;
//Binh variable declaration
static void *lib_handle;
static PCIE_HANDLE hPCIE =0;
//query area
//static array<Char>^ QueryHex = gcnew array<Char>(MAX_QUERY_SIZE);
static array<Char>^ MemoryBlock = gcnew array<Char>(MEM_SIZE);
boolean end_subject = false;
ifstream * ptr_file;
boolean first = true;
int linecounter = 0;
char^ startMaker = '>';
//database area
boolean full_buffer = false;
int subject_ID = 0;
int subject_length;
// Command
int command = 0;
private: System::Windows::Forms::Button^ button4;
private: System::Windows::Forms::Button^ button6;
private: System::Windows::Forms::TabControl^ tabControl1;
private: System::Windows::Forms::TabPage^ tabPage2;
private: System::Windows::Forms::RichTextBox^ outDumpMemory;
private: System::Windows::Forms::TabPage^ tabPage1;
private: System::Windows::Forms::DataGridView^ outHitScore_Grid;
private: System::Windows::Forms::DataGridViewTextBoxColumn^ Column4;
private: System::Windows::Forms::DataGridViewTextBoxColumn^ Column3;
private: System::Windows::Forms::DataGridViewTextBoxColumn^ Column2;
private: System::Windows::Forms::DataGridViewTextBoxColumn^ Column1;
private: System::Windows::Forms::GroupBox^ gb_query;
private: System::Windows::Forms::GroupBox^ gb_subject;
private: System::Windows::Forms::GroupBox^ gb_control;
private: System::Windows::Forms::DataGridViewTextBoxColumn^ hit_add_inQ_UnGap;
private: System::Windows::Forms::DataGridViewTextBoxColumn^ hit_add_inS_UnGap;
private: System::Windows::Forms::DataGridViewTextBoxColumn^ hit_length_UnGap;
private: System::Windows::Forms::DataGridViewTextBoxColumn^ hit_add_score;
private: System::Windows::Forms::TextBox^ hitscore_length;
private: System::Windows::Forms::Label^ label2;
private: System::Windows::Forms::Label^ label1;
private: System::Windows::Forms::Button^ button5;
private: System::Windows::Forms::ComboBox^ hitscore_ID;
//
protected:
private:
/// <summary>
/// Required designer variable.
/// </summary>
System::ComponentModel::Container ^components;
#pragma region Windows Form Designer generated code
/// <summary>
/// Required method for Designer support - do not modify
/// the contents of this method with the code editor.
/// </summary>
boolean CovertQuery2Bit1(char indata[], int inQueryNuclearLength, char outdata[], int beginIdx)
{
int i;
int temp_base;
int temp_offset;
int temp_value;
temp_base = beginIdx;
temp_offset = 0;
// = indata->ToUpper();
cout <<endl <<"Convert instring:" << indata << endl;
//clean outdata
for (i = 0; i < inQueryNuclearLength * 3 / 8; i++)
{
outdata[i] = 0;
}
for (i = 0; i < inQueryNuclearLength && indata[i] != 0 && indata[i] != 10; i++)
{
if (indata[i] == 'a') { indata[i] = 'A'; }
else if (indata[i] == 'g') { indata[i] = 'G'; }
else if (indata[i] == 't') { indata[i] = 'T'; }
else if (indata[i] == 'c') { indata[i] = 'C'; }
else if (indata[i] == 'n') { indata[i] = 'N'; }
if (indata[i] == 'A') { temp_value = A_ADN << temp_offset; }
else if (indata[i] == 'G') { temp_value = G_ADN << temp_offset; }
else if (indata[i] == 'T') { temp_value = T_ADN << temp_offset; }
else if (indata[i] == 'C') { temp_value = C_ADN << temp_offset; }
else if (indata[i] == 'N') { temp_value = N_ADN << temp_offset; }
else {
Console::WriteLine("00:invalid query at index {0}, content:{1:X}", i, indata[i]);
return false;
}
outdata[temp_base] |= temp_value;
//printf("[%d][%c][BASE %d][offset %d][CONVERT %d][TEMP VALUE %d]\n",i, indata[i],temp_base, temp_offset, outdata[temp_base], temp_value );
if (temp_offset == 6){
temp_base++;
temp_offset = 1;
if (indata[i] == 'A') { temp_value = A_ADN >> 2; }
else if (indata[i] == 'G') { temp_value = G_ADN >> 2; }
else if (indata[i] == 'T') { temp_value = T_ADN >> 2; }
else if (indata[i] == 'C') { temp_value = C_ADN >> 2; }
else if (indata[i] == 'N') { temp_value = N_ADN >> 2; }
else {
Console::WriteLine("01:invalid query at index {0}, content {1:X}", i, indata[i]);
return false;
}
outdata[temp_base] |= temp_value;
}
else if (temp_offset == 7){
temp_base++;
temp_offset = 2;
if (indata[i] == 'A') { temp_value = A_ADN >> 1; }
else if (indata[i] == 'G') { temp_value = G_ADN >> 1; }
else if (indata[i] == 'T') { temp_value = T_ADN >> 1; }
else if (indata[i] == 'C') { temp_value = C_ADN >> 1; }
else if (indata[i] == 'N') { temp_value = N_ADN >> 1; }
else {
//Console::WriteLine("02:invalid query at index {0}, content {1:X}", i, indata[i]);
return false;
}
outdata[temp_base] |= temp_value;
}
else{
temp_offset += 3;
if (temp_offset == 8){
temp_base++;
temp_offset = 0;
}
}
//Console::WriteLine(indata[i]);
//Console::WriteLine("{0:X}", outdata[temp_base]);
//printf(" [%d][%c][BASE %d][offset %d][CONVERT %d][TEMP VALUE %d]\n",i, indata[i],temp_base, temp_offset, outdata[temp_base], temp_value );
}
return true;
}
void MarshalString(String ^ s, string& os) {
using namespace Runtime::InteropServices;
const char* chars =
(const char*)(Marshal::StringToHGlobalAnsi(s)).ToPointer();
os = chars;
Marshal::FreeHGlobal(IntPtr((void*)chars));
}
boolean readSubject(char outSubjectBYTE[])
{
static char inSubject[MAX_QUERY_NUCLEAR_SIZE] = {""};
char buff_line[DATABASE_LINE_WIDTH] = { "" };
int Slength = 0;
//reset inSubject string
strncpy(inSubject, "",1);
while (!end_subject)
{
if (ptr_file->eof())
{
MessageBox::Show("Cant read file!", "", MessageBoxButtons::OK, MessageBoxIcon::Error);
return false;
}
//strcpy(buff_line, "");
ptr_file->getline(buff_line, DATABASE_LINE_WIDTH);
cout << endl<< "LINE: " << buff_line << endl;
if (buff_line[0].Equals(startMaker) || ptr_file->eof())
{
cout << "head subject" << endl;
if (first)
{
first = false;
}
else
{
subject_ID++;
CovertQuery2Bit1(inSubject, strlen(inSubject), outSubjectBYTE, 8);
subject_length = strlen(&outSubjectBYTE[8]);
outSubjectBYTE[7] = subject_ID & 0xFF;
outSubjectBYTE[6] = (subject_ID >> 8) & 0xFF;
outSubjectBYTE[5] = (subject_ID >> 16) & 0xFF;
outSubjectBYTE[4] = (subject_ID >> 24) & 0xFF;
outSubjectBYTE[3] = subject_length & 0xFF;
outSubjectBYTE[2] = (subject_length >> 8) & 0xFF;
outSubjectBYTE[1] = (subject_length >> 16) & 0xFF;
outSubjectBYTE[0] = (subject_length >> 24) & 0xFF;
end_subject = true;
outSubject->Text = gcnew String(inSubject);
}
//cout << "SUBJECT INHEX:" << outSubject << endl;
}
else
{
strncat(inSubject, buff_line, strlen(buff_line));
//add end of string
int i = strlen(inSubject);
if (inSubject[i - 1] == 10){
inSubject[i - 1] = 0;
}
cout << "data line: " << buff_line << endl;
//cout << "insubject: " << inSubject << endl;
}
}
end_subject = false;
return true;
}
void PrintStringInHex(char indata[], int SIZE)
{
for (int i = 0; i < SIZE; i++)
{
Console::Write("{0:X} ", indata[i]);
}
}
void displayHitscoreBoard(int inHitID)
{
//read file
FILE * ptrfile_hitscore;
char buff[50] = { "" };
int HitIDfile;
int HitLengthfile;
char temp[10];
boolean end_hitscore = false;
boolean found = false;
//file handling
int hs_length;
int hs_hs;
int hs_addQ_upGap;
int hs_addS_upGap;
ptrfile_hitscore = fopen("HITSCORE.HEX", "r");
while (fgets(buff, 80, ptrfile_hitscore) != NULL && !end_hitscore)
{
/* get a line, up to 80 chars from fr. done if NULL */
if (!strncmp(buff, "ID", 2))
{
sscanf(&buff[3], "%d %s %d", &HitIDfile, &temp, &HitLengthfile);
cout << "head ID" << HitIDfile;
if (HitIDfile == inHitID)
{
cout << "found" << endl;
found = true;
hitscore_length->Text = HitLengthfile + "";
}
else if (found){
cout << "END" << endl;
end_hitscore = true;
}
}
else if (found)
{
cout << "BINH" << buff << endl;
sscanf(buff, "%d %d %d %d", &hs_addQ_upGap, &hs_addS_upGap, &hs_length, &hs_hs);
outHitScore_Grid->Rows->Add(
hs_hs, hs_length, hs_addS_upGap, hs_addQ_upGap);
}
}
fclose(ptrfile_hitscore); /* close the file prior to exiting the routine */
}
boolean getHitScore()
{
static char HitScore[MAX_HIT_SCORE_SIZE];
FILE * fp;
int hs_ID = 0;
int hs_length = 0;
static int hs_ID_writen = 0;
boolean pass = false;
const PCIE_LOCAL_ADDRESS LocalAddr = PCIE_MEM_SCORE_ADDR;
if (!PCIE_DmaRead(hPCIE, LocalAddr, HitScore, MAX_HIT_SCORE_SIZE))
{
MessageBox::Show("PCIE DMA Memory Write failed!\n\nPlease reboot your PC", "DMA Memory ERROR", MessageBoxButtons::OK, MessageBoxIcon::Error);
}
else
{
outTextStatus->Text = "Read hit and score pairs successful!";
outHitScore_Grid->Rows->Clear();
//display hit score
hs_length = HitScore[3];//stoi(HitScore, 0, 3); // [3] + HitScore[2] * 256 + HitScore[1] * 256 * 256 + HitScore[0] * 256 * 256 * 256;
hs_ID = HitScore[7] + HitScore[6] * 256 + HitScore[5] * 256 * 256 + HitScore[4] * 256 * 256 * 256;
//hitscore_ID->Text = hs_ID + "";
hitscore_length->Text = hs_length + "";
cout << endl << "Hit score report: hs length[" << hs_length << "][" << hs_ID << "]" << endl;
for (int i = 0; i < MAX_HIT_SCORE_SIZE; i = i + 1)
{
Console::Write("{0:x} ", HitScore[i]);
}
for (int i = 8; i < MAX_HIT_SCORE_SIZE && i < hs_length * 8; i = i + 8)
{
outHitScore_Grid->Rows->Add(
HitScore[i + 3]+1, HitScore[i + 2]+1, HitScore[i + 1], HitScore[i + 1]*2);
}
if (hs_ID == subject_ID)
{
if (subject_ID == 1)
{
fp = fopen("HIT_SCORE.HEX", "w");
hs_ID_writen = 1;
pass = true;
}
else if (subject_ID != hs_ID_writen)
{
fp = fopen("HIT_SCORE.HEX", "a+");
hs_ID_writen = subject_ID;
pass = true;
}
if (pass)
{
fprintf(fp, "ID %d length %d\n", hs_ID, hs_length);
for (int i = 8; i < MAX_HIT_SCORE_SIZE && i < hs_length * 8; i = i + 8)
{
fprintf(fp, "%d %d %d %d\n", HitScore[i + 0], HitScore[i + 1], HitScore[i + 2], HitScore[i + 3]);
}
fclose(fp);
}
}
else
{
return false;
}
}
return true;
}
boolean sendSubject()
{
static char outSubjectByte[MAX_SUBJECT_SIZE];
boolean pass;
pass = readSubject(outSubjectByte);
if (pass)
{
DisplaySubjectID(subject_ID, subject_length);
cout << "OUT SUBJECT: ";
PrintStringInHex(outSubjectByte, subject_length + 8);
//write query data
pass = PCIE_DmaWrite(hPCIE, PCIE_MEM_SUBJECT_ADDR, outSubjectByte, subject_length + 8);
if (pass)
{
//write trigger command
pass = writeTriggerCommand(WRITE_SUBJECT);
if (pass)
{
outTextStatus->Text = "Write Subject successful";
}
else
{
MessageBox::Show("PCIE DMA Memory Write failed!\n\nPlease reboot your PC", "DMA Memory ERROR", MessageBoxButtons::OK, MessageBoxIcon::Error);
}
}
else
{
MessageBox::Show("PCIE DMA Memory Write failed!\n\nPlease reboot your PC", "DMA Memory ERROR", MessageBoxButtons::OK, MessageBoxIcon::Error);
}
}
else
{
return false;
}
return true;
}
boolean writeTriggerCommand(int command)
{
return PCIE_Write32(hPCIE, PCIE_USER_BAR, PCIE_CMD_ADDR, command);
}
void DisplaySubjectID(int id, int length)
{
gb_subject->Text = "SUBJECT [ID:" + id + "][length:" + length + "]";
}
void InitializeComponent(void)
{
this->button1 = (gcnew System::Windows::Forms::Button());
this->outStatus = (gcnew System::Windows::Forms::StatusStrip());
this->outTextStatus = (gcnew System::Windows::Forms::ToolStripStatusLabel());
this->inQuery = (gcnew System::Windows::Forms::TextBox());
this->outSubject = (gcnew System::Windows::Forms::RichTextBox());
this->button2 = (gcnew System::Windows::Forms::Button());
this->button3 = (gcnew System::Windows::Forms::Button());
this->outSubjectID = (gcnew System::Windows::Forms::Label());
this->outSubjectLength = (gcnew System::Windows::Forms::Label());
this->button4 = (gcnew System::Windows::Forms::Button());
this->button6 = (gcnew System::Windows::Forms::Button());
this->tabControl1 = (gcnew System::Windows::Forms::TabControl());
this->tabPage1 = (gcnew System::Windows::Forms::TabPage());
this->hitscore_ID = (gcnew System::Windows::Forms::ComboBox());
this->hitscore_length = (gcnew System::Windows::Forms::TextBox());
this->label2 = (gcnew System::Windows::Forms::Label());
this->label1 = (gcnew System::Windows::Forms::Label());
this->outHitScore_Grid = (gcnew System::Windows::Forms::DataGridView());
this->hit_add_inQ_UnGap = (gcnew System::Windows::Forms::DataGridViewTextBoxColumn());
this->hit_add_inS_UnGap = (gcnew System::Windows::Forms::DataGridViewTextBoxColumn());
this->hit_length_UnGap = (gcnew System::Windows::Forms::DataGridViewTextBoxColumn());
this->hit_add_score = (gcnew System::Windows::Forms::DataGridViewTextBoxColumn());
this->tabPage2 = (gcnew System::Windows::Forms::TabPage());
this->outDumpMemory = (gcnew System::Windows::Forms::RichTextBox());
this->Column4 = (gcnew System::Windows::Forms::DataGridViewTextBoxColumn());
this->Column3 = (gcnew System::Windows::Forms::DataGridViewTextBoxColumn());
this->Column2 = (gcnew System::Windows::Forms::DataGridViewTextBoxColumn());
this->Column1 = (gcnew System::Windows::Forms::DataGridViewTextBoxColumn());
this->gb_query = (gcnew System::Windows::Forms::GroupBox());
this->gb_subject = (gcnew System::Windows::Forms::GroupBox());
this->gb_control = (gcnew System::Windows::Forms::GroupBox());
this->button5 = (gcnew System::Windows::Forms::Button());
this->outStatus->SuspendLayout();
this->tabControl1->SuspendLayout();
this->tabPage1->SuspendLayout();
(cli::safe_cast<System::ComponentModel::ISupportInitialize^>(this->outHitScore_Grid))->BeginInit();
this->tabPage2->SuspendLayout();
this->gb_query->SuspendLayout();
this->gb_subject->SuspendLayout();
this->gb_control->SuspendLayout();
this->SuspendLayout();
//
// button1
//
this->button1->Location = System::Drawing::Point(5, 15);
this->button1->Name = L"button1";
this->button1->Size = System::Drawing::Size(92, 23);
this->button1->TabIndex = 0;
this->button1->Text = L"Query";
this->button1->UseVisualStyleBackColor = true;
this->button1->Click += gcnew System::EventHandler(this, &MyForm::button1_Click);
//
// outStatus
//
this->outStatus->Items->AddRange(gcnew cli::array< System::Windows::Forms::ToolStripItem^ >(1) { this->outTextStatus });
this->outStatus->Location = System::Drawing::Point(0, 457);
this->outStatus->Name = L"outStatus";
this->outStatus->Size = System::Drawing::Size(806, 22);
this->outStatus->TabIndex = 1;
this->outStatus->Text = L"status here";
this->outStatus->ItemClicked += gcnew System::Windows::Forms::ToolStripItemClickedEventHandler(this, &MyForm::statusStrip1_ItemClicked);
//
// outTextStatus
//
this->outTextStatus->Name = L"outTextStatus";
this->outTextStatus->Size = System::Drawing::Size(0, 17);
//
// inQuery
//
this->inQuery->Location = System::Drawing::Point(6, 16);
this->inQuery->Name = L"inQuery";
this->inQuery->Size = System::Drawing::Size(671, 20);
this->inQuery->TabIndex = 5;
this->inQuery->Text = L"ATGACGTCTATTTTCGTGAAACAATTTTCGTGAAAACGTCTAAACCAAGTCAAAAATTCGTGAATACGTCTATTTTCGTGA"
L"AACAATGTTAACGGATAACTAAACCAAGTCAAAAATTTTCGTGAATT";
//
// outSubject
//
this->outSubject->Enabled = false;
this->outSubject->Location = System::Drawing::Point(6, 18);
this->outSubject->Name = L"outSubject";
this->outSubject->Size = System::Drawing::Size(670, 102);
this->outSubject->TabIndex = 6;
this->outSubject->Text = L"";
this->outSubject->TextChanged += gcnew System::EventHandler(this, &MyForm::outSubject_TextChanged);
//
// button2
//
this->button2->Location = System::Drawing::Point(5, 44);
this->button2->Name = L"button2";
this->button2->Size = System::Drawing::Size(92, 23);
this->button2->TabIndex = 0;
this->button2->Text = L"Subject";
this->button2->UseVisualStyleBackColor = true;
this->button2->Click += gcnew System::EventHandler(this, &MyForm::button2_Click);
//
// button3
//
this->button3->Location = System::Drawing::Point(5, 158);
this->button3->Name = L"button3";
this->button3->Size = System::Drawing::Size(92, 23);
this->button3->TabIndex = 8;
this->button3->Text = L"Exit";
this->button3->UseVisualStyleBackColor = true;
this->button3->Click += gcnew System::EventHandler(this, &MyForm::button3_Click);
//
// outSubjectID
//
this->outSubjectID->AutoSize = true;
this->outSubjectID->Location = System::Drawing::Point(40, 53);
this->outSubjectID->Name = L"outSubjectID";
this->outSubjectID->Size = System::Drawing::Size(0, 13);
this->outSubjectID->TabIndex = 10;
//
// outSubjectLength
//
this->outSubjectLength->AutoSize = true;
this->outSubjectLength->Location = System::Drawing::Point(52, 82);
this->outSubjectLength->Name = L"outSubjectLength";
this->outSubjectLength->Size = System::Drawing::Size(0, 13);
this->outSubjectLength->TabIndex = 11;
//
// button4
//
this->button4->Location = System::Drawing::Point(5, 73);
this->button4->Name = L"button4";
this->button4->Size = System::Drawing::Size(92, 23);
this->button4->TabIndex = 12;
this->button4->Text = L"Hit Score";
this->button4->UseVisualStyleBackColor = true;
this->button4->Click += gcnew System::EventHandler(this, &MyForm::button4_Click);
//
// button6
//
this->button6->Location = System::Drawing::Point(5, 102);
this->button6->Name = L"button6";
this->button6->Size = System::Drawing::Size(92, 23);
this->button6->TabIndex = 13;
this->button6->Text = L"Dump memory";
this->button6->UseVisualStyleBackColor = true;
this->button6->Click += gcnew System::EventHandler(this, &MyForm::button6_Click);
//
// tabControl1
//
this->tabControl1->Controls->Add(this->tabPage1);
this->tabControl1->Controls->Add(this->tabPage2);
this->tabControl1->Location = System::Drawing::Point(7, 187);
this->tabControl1->Name = L"tabControl1";
this->tabControl1->SelectedIndex = 0;
this->tabControl1->Size = System::Drawing::Size(793, 267);
this->tabControl1->TabIndex = 14;
//
// tabPage1
//
this->tabPage1->Controls->Add(this->hitscore_ID);
this->tabPage1->Controls->Add(this->hitscore_length);
this->tabPage1->Controls->Add(this->label2);
this->tabPage1->Controls->Add(this->label1);
this->tabPage1->Controls->Add(this->outHitScore_Grid);
this->tabPage1->Location = System::Drawing::Point(4, 22);
this->tabPage1->Name = L"tabPage1";
this->tabPage1->Padding = System::Windows::Forms::Padding(3);
this->tabPage1->Size = System::Drawing::Size(785, 241);
this->tabPage1->TabIndex = 0;
this->tabPage1->Text = L"Hit and score pairs";
this->tabPage1->UseVisualStyleBackColor = true;
this->tabPage1->Click += gcnew System::EventHandler(this, &MyForm::tabPage1_Click);
//
// hitscore_ID
//
this->hitscore_ID->FormattingEnabled = true;
this->hitscore_ID->Location = System::Drawing::Point(76, 4);
this->hitscore_ID->Name = L"hitscore_ID";
this->hitscore_ID->Size = System::Drawing::Size(121, 21);
this->hitscore_ID->TabIndex = 5;
this->hitscore_ID->SelectedIndexChanged += gcnew System::EventHandler(this, &MyForm::comboBox1_SelectedIndexChanged);
//
// hitscore_length
//
this->hitscore_length->Enabled = false;
this->hitscore_length->Location = System::Drawing::Point(376, 6);
this->hitscore_length->Name = L"hitscore_length";
this->hitscore_length->Size = System::Drawing::Size(144, 20);
this->hitscore_length->TabIndex = 4;
//
// label2
//
this->label2->AutoSize = true;
this->label2->Location = System::Drawing::Point(200, 9);
this->label2->Name = L"label2";
this->label2->Size = System::Drawing::Size(170, 13);
this->label2->TabIndex = 2;
this->label2->Text = L"NUMBER OF HIT SCORE PAIRS:";
//
// label1
//
this->label1->AutoSize = true;
this->label1->Location = System::Drawing::Point(6, 9);
this->label1->Name = L"label1";
this->label1->Size = System::Drawing::Size(72, 13);
this->label1->TabIndex = 1;
this->label1->Text = L"SUBJECT ID:";
//
// outHitScore_Grid
//
this->outHitScore_Grid->AllowUserToDeleteRows = false;
this->outHitScore_Grid->ColumnHeadersHeightSizeMode = System::Windows::Forms::DataGridViewColumnHeadersHeightSizeMode::AutoSize;
this->outHitScore_Grid->Columns->AddRange(gcnew cli::array< System::Windows::Forms::DataGridViewColumn^ >(4) {
this->hit_add_inQ_UnGap,
this->hit_add_inS_UnGap, this->hit_length_UnGap, this->hit_add_score
});
this->outHitScore_Grid->Location = System::Drawing::Point(3, 34);
this->outHitScore_Grid->Name = L"outHitScore_Grid";
this->outHitScore_Grid->ReadOnly = true;
this->outHitScore_Grid->Size = System::Drawing::Size(779, 204);
this->outHitScore_Grid->TabIndex = 0;
this->outHitScore_Grid->CellContentClick += gcnew System::Windows::Forms::DataGridViewCellEventHandler(this, &MyForm::outHitScore_Grid_CellContentClick);
//
// hit_add_inQ_UnGap
//
this->hit_add_inQ_UnGap->AutoSizeMode = System::Windows::Forms::DataGridViewAutoSizeColumnMode::Fill;
this->hit_add_inQ_UnGap->HeaderText = L"hit_add_inQ_UnGap";
this->hit_add_inQ_UnGap->Name = L"hit_add_inQ_UnGap";
this->hit_add_inQ_UnGap->ReadOnly = true;
//
// hit_add_inS_UnGap
//
this->hit_add_inS_UnGap->AutoSizeMode = System::Windows::Forms::DataGridViewAutoSizeColumnMode::Fill;
this->hit_add_inS_UnGap->HeaderText = L"hit_add_inS_UnGap";
this->hit_add_inS_UnGap->Name = L"hit_add_inS_UnGap";
this->hit_add_inS_UnGap->ReadOnly = true;
//
// hit_length_UnGap
//
this->hit_length_UnGap->AutoSizeMode = System::Windows::Forms::DataGridViewAutoSizeColumnMode::Fill;
this->hit_length_UnGap->HeaderText = L"hit_length_UnGap";
this->hit_length_UnGap->Name = L"hit_length_UnGap";
this->hit_length_UnGap->ReadOnly = true;
//
// hit_add_score
//
this->hit_add_score->AutoSizeMode = System::Windows::Forms::DataGridViewAutoSizeColumnMode::Fill;
this->hit_add_score->HeaderText = L"hit_add_score";
this->hit_add_score->Name = L"hit_add_score";
this->hit_add_score->ReadOnly = true;
//
// tabPage2
//
this->tabPage2->Controls->Add(this->outDumpMemory);
this->tabPage2->Location = System::Drawing::Point(4, 22);
this->tabPage2->Name = L"tabPage2";
this->tabPage2->Padding = System::Windows::Forms::Padding(3);
this->tabPage2->Size = System::Drawing::Size(785, 241);
this->tabPage2->TabIndex = 1;
this->tabPage2->Text = L"Dump memory";
this->tabPage2->UseVisualStyleBackColor = true;
//
// outDumpMemory
//
this->outDumpMemory->Dock = System::Windows::Forms::DockStyle::Fill;
this->outDumpMemory->Location = System::Drawing::Point(3, 3);
this->outDumpMemory->Name = L"outDumpMemory";
this->outDumpMemory->Size = System::Drawing::Size(779, 235);
this->outDumpMemory->TabIndex = 0;
this->outDumpMemory->Text = L"";
//
// Column4
//
this->Column4->HeaderText = L"Column4";
this->Column4->Name = L"Column4";
this->Column4->ReadOnly = true;
//
// Column3
//
this->Column3->HeaderText = L"Column3";
this->Column3->Name = L"Column3";
this->Column3->ReadOnly = true;
//
// Column2
//
this->Column2->HeaderText = L"Column2";
this->Column2->Name = L"Column2";
this->Column2->ReadOnly = true;
//
// Column1
//
this->Column1->HeaderText = L"Column1";
this->Column1->Name = L"Column1";
this->Column1->ReadOnly = true;
//
// gb_query
//
this->gb_query->Controls->Add(this->inQuery);
this->gb_query->Location = System::Drawing::Point(6, 3);
this->gb_query->Name = L"gb_query";
this->gb_query->Size = System::Drawing::Size(683, 51);
this->gb_query->TabIndex = 15;
this->gb_query->TabStop = false;
this->gb_query->Text = L"QUERY";
//
// gb_subject
//
this->gb_subject->Controls->Add(this->outSubject);
this->gb_subject->Location = System::Drawing::Point(7, 56);
this->gb_subject->Name = L"gb_subject";
this->gb_subject->Size = System::Drawing::Size(682, 128);
this->gb_subject->TabIndex = 6;
this->gb_subject->TabStop = false;
this->gb_subject->Text = L"SUBJECT";
this->gb_subject->Enter += gcnew System::EventHandler(this, &MyForm::groupBox2_Enter);
//
// gb_control
//
this->gb_control->Controls->Add(this->button5);
this->gb_control->Controls->Add(this->button1);
this->gb_control->Controls->Add(this->button2);
this->gb_control->Controls->Add(this->button4);
this->gb_control->Controls->Add(this->button6);
this->gb_control->Controls->Add(this->button3);
this->gb_control->Location = System::Drawing::Point(695, 3);
this->gb_control->Name = L"gb_control";
this->gb_control->Size = System::Drawing::Size(105, 200);
this->gb_control->TabIndex = 16;
this->gb_control->TabStop = false;
this->gb_control->Text = L"Control Panel";
//
// button5
//
this->button5->Location = System::Drawing::Point(5, 131);
this->button5->Name = L"button5";
this->button5->Size = System::Drawing::Size(92, 23);
this->button5->TabIndex = 14;
this->button5->Text = L"Subject Full";
this->button5->UseVisualStyleBackColor = true;
this->button5->Click += gcnew System::EventHandler(this, &MyForm::button5_Click_1);
//
// MyForm
//
this->AutoScaleDimensions = System::Drawing::SizeF(6, 13);
this->AutoScaleMode = System::Windows::Forms::AutoScaleMode::Font;
this->ClientSize = System::Drawing::Size(806, 479);
this->Controls->Add(this->gb_control);
this->Controls->Add(this->gb_subject);
this->Controls->Add(this->gb_query);
this->Controls->Add(this->tabControl1);
this->Controls->Add(this->outSubjectLength);
this->Controls->Add(this->outSubjectID);
this->Controls->Add(this->outStatus);
this->Name = L"MyForm";
this->Text = L"MyForm";
this->outStatus->ResumeLayout(false);
this->outStatus->PerformLayout();
this->tabControl1->ResumeLayout(false);
this->tabPage1->ResumeLayout(false);
this->tabPage1->PerformLayout();
(cli::safe_cast<System::ComponentModel::ISupportInitialize^>(this->outHitScore_Grid))->EndInit();
this->tabPage2->ResumeLayout(false);
this->gb_query->ResumeLayout(false);
this->gb_query->PerformLayout();
this->gb_subject->ResumeLayout(false);
this->gb_control->ResumeLayout(false);
this->ResumeLayout(false);
this->PerformLayout();
}
#pragma endregion
private: System::Void button1_Click(System::Object^ sender, System::EventArgs^ e) {
boolean returnvalue = true;
static char QueryHex[MAX_QUERY_SIZE];
static char inQueryNuclear[MAX_QUERY_NUCLEAR_SIZE];
strcpy(inQueryNuclear, (char*)Marshal::StringToHGlobalAnsi(inQuery->Text->Trim()).ToPointer());
const PCIE_LOCAL_ADDRESS LocalAddr = PCIE_MEM_QUERY_ADDR;
//tobe updated
ptr_file->close();
ptr_file->open(DATABASE_FILENAME);
subject_ID = 0;
first = true;
if (inQuery->Text->Trim()->Length == 0)
{
MessageBox::Show("The NULL nuclear is NOT allowed!", "", MessageBoxButtons::OK, MessageBoxIcon::Error);
}
else
{
//MessageBox::Show("pass!", "", MessageBoxButtons::OK, MessageBoxIcon::Error);
returnvalue = CovertQuery2Bit1(inQueryNuclear, MAX_QUERY_NUCLEAR_SIZE, QueryHex, 0);
PrintStringInHex(QueryHex, MAX_QUERY_SIZE);
//Console::WriteLine(inQueryNuclear);
if (!returnvalue){
MessageBox::Show("Invalid input nuclear string!", "", MessageBoxButtons::OK, MessageBoxIcon::Error);
}
else
{
//write query data
boolean pass = PCIE_DmaWrite(hPCIE, PCIE_MEM_QUERY_ADDR, QueryHex, MAX_QUERY_SIZE);
if (pass)
{
//write trigger command
pass = writeTriggerCommand(WRITE_QUERY);
if (pass)
{
outTextStatus->Text = "Write Query successful";
subject_ID = 0;
subject_length = 0;
DisplaySubjectID(subject_ID, subject_length);
}
else
{
MessageBox::Show("PCIE DMA Memory Write failed!\n\nPlease reboot your PC", "DMA Memory ERROR", MessageBoxButtons::OK, MessageBoxIcon::Error);
}
}
else
{
MessageBox::Show("PCIE DMA Memory Write failed!\n\nPlease reboot your PC", "DMA Memory ERROR", MessageBoxButtons::OK, MessageBoxIcon::Error);
}
}
}
}
private: System::Void button3_Click(System::Object^ sender, System::EventArgs^ e) {
int result = 0;
result = (int)MessageBox::Show("Do you want to exit?", "NGUYEN APPLICATION", MessageBoxButtons::YesNo, MessageBoxIcon::Warning);
switch (result)
{
case IDYES:
PCIE_Close(hPCIE);
PCIE_Unload(lib_handle);
ptr_file->close();
this->Close();
break;
case IDNO:
// Do something
break;
case IDCANCEL:
// Do something
break;
}
}
private: System::Void label2_Click(System::Object^ sender, System::EventArgs^ e) {
}
private: System::Void label4_Click(System::Object^ sender, System::EventArgs^ e) {
}
private: System::Void outSubject_TextChanged(System::Object^ sender, System::EventArgs^ e) {
}
private: System::Void outHitScorePairs_TextChanged(System::Object^ sender, System::EventArgs^ e) {
}
private: System::Void statusStrip1_ItemClicked(System::Object^ sender, System::Windows::Forms::ToolStripItemClickedEventArgs^ e) {
}
private: System::Void button2_Click(System::Object^ sender, System::EventArgs^ e) {
sendSubject();
}
private: System::Void outHitScore_SelectedIndexChanged(System::Object^ sender, System::EventArgs^ e) {
}
private: System::Void button5_Click(System::Object^ sender, System::EventArgs^ e) {
}
private: System::Void tabPage1_Click(System::Object^ sender, System::EventArgs^ e) {
}
private: System::Void textBox2_TextChanged(System::Object^ sender, System::EventArgs^ e) {
}
private: System::Void button6_Click(System::Object^ sender, System::EventArgs^ e) {
char MemoryBlock[MEM_SIZE];
FILE * fp;
const PCIE_LOCAL_ADDRESS LocalAddr = PCIE_MEM_QUERY_ADDR;
boolean pass;
pass = PCIE_DmaRead(hPCIE, LocalAddr, MemoryBlock, MEM_SIZE);
if (!pass)
{
MessageBox::Show("PCIE DMA Memory Write failed!\n\nPlease reboot your PC", "DMA Memory ERROR", MessageBoxButtons::OK, MessageBoxIcon::Error);
}
else
{
fp = fopen("ALL_MEMORY.HEX", "w+");
for (int i = 0; i < MEM_SIZE; i++) {
if (i % 24 == 0 && i != 0) {
fprintf(fp, "\n");
}
else if (i % 8 == 0 && i != 0) {
fprintf(fp, "_ ");
}
fprintf(fp, "%02X ", (unsigned char)MemoryBlock[i]);
}
fclose(fp);
#ifdef DEBUG
outDumpMemory->Text = "";
for (int i = 0; i < MEM_SIZE; i++)
{
outDumpMemory->AppendText(MemoryBlock[i] + " ");
if (i % 24 == 0 && i > 0)
{
outDumpMemory->AppendText("\n");
}
else if (i % 8 == 0 && i > 0)
{
outDumpMemory->AppendText(" _ ");
}
}
#endif // DEBUG
outTextStatus->Text = "Dump all memory data successful!";
}
}
private: System::Void button4_Click(System::Object^ sender, System::EventArgs^ e) {
getHitScore();