Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

BDV HDF error on large multiposition acquisition #453

Closed
zacsimile opened this issue May 18, 2023 · 0 comments
Closed

BDV HDF error on large multiposition acquisition #453

zacsimile opened this issue May 18, 2023 · 0 comments
Assignees
Labels
bug Something isn't working priority task Let's get this done!

Comments

@zacsimile
Copy link
Collaborator

Traceback (most recent call last):
  File "C:\Users\DeanLab\.conda\envs\ASLM\lib\threading.py", line 973, in _bootstrap_inner
    self.run()
  File "C:\Users\DeanLab\.conda\envs\ASLM\lib\threading.py", line 910, in run
    self._target(*self._args, **self._kwargs)
  File "c:\users\deanlab\desktop\github\aslm\src\aslm\model\model.py", line 719, in run_data_process
    data_func(frame_ids)
  File "c:\users\deanlab\desktop\github\aslm\src\aslm\model\features\image_writer.py", line 190, in save_image
    self.data_source.write(
  File "c:\users\deanlab\desktop\github\aslm\src\aslm\model\data_sources\bdv_data_source.py", line 135, in write
    self.image[dataset_name][zs, ...] = data[::dx, ::dy].T
  File "h5py\_objects.pyx", line 54, in h5py._objects.with_phil.wrapper
  File "h5py\_objects.pyx", line 55, in h5py._objects.with_phil.wrapper
  File "C:\Users\DeanLab\.conda\envs\ASLM\lib\site-packages\h5py\_hl\group.py", line 328, in __getitem__
    oid = h5o.open(self.id, self._e(name), lapl=self._lapl)
  File "h5py\_objects.pyx", line 54, in h5py._objects.with_phil.wrapper
  File "h5py\_objects.pyx", line 55, in h5py._objects.with_phil.wrapper
  File "h5py\h5o.pyx", line 190, in h5py.h5o.open
ValueError: Invalid location identifier (invalid location identifier)  
@zacsimile zacsimile changed the title BDV HDF error on large multitable acquisition BDV HDF error on large multiposition acquisition May 19, 2023
@zacsimile zacsimile added bug Something isn't working priority task Let's get this done! labels May 19, 2023
@zacsimile zacsimile self-assigned this May 19, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Something isn't working priority task Let's get this done!
Projects
None yet
Development

No branches or pull requests

1 participant