forked from bids-apps/CPAC
-
Notifications
You must be signed in to change notification settings - Fork 1
/
circle.yml
55 lines (48 loc) · 3.88 KB
/
circle.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
general:
artifacts:
- "~/outputs1"
- "~/outputs2"
machine:
services:
- docker
dependencies:
cache_directories:
- "~/docker"
- "~/data"
override:
# - if [[ ! -d ~/data/ds114_test1 ]]; then wget -c -P ${HOME}/downloads/ "https://googledrive.com/host/0B2JWN60ZLkgkMEw4bW5VUUpSdFU/ds114_test1.tar" && mkdir -p ${HOME}/data && tar xf ${HOME}/downloads/ds114_test1.tar -C ${HOME}/data; fi
# - if [[ ! -d ~/data/ds114_test2 ]]; then wget -c -P ${HOME}/downloads/ "https://googledrive.com/host/0B2JWN60ZLkgkMEw4bW5VUUpSdFU/ds114_test2.tar" && mkdir -p ${HOME}/data && tar xf ${HOME}/downloads/ds114_test2.tar -C ${HOME}/data; fi
- if [[ ! -d ~/data/ds114_test1 ]]; then wget -c -O ${HOME}/ds114_test1.tar "https://files.osf.io/v1/resources/9q7dv/providers/osfstorage/57e54a326c613b01d7d3ed90" && mkdir -p ${HOME}/data && tar xf ${HOME}/ds114_test1.tar -C ${HOME}/data; fi
- if [[ ! -d ~/data/ds114_test2 ]]; then wget -c -O ${HOME}/ds114_test2.tar "https://files.osf.io/v1/resources/9q7dv/providers/osfstorage/57e549f9b83f6901d457d162" && mkdir -p ${HOME}/data && tar xf ${HOME}/ds114_test2.tar -C ${HOME}/data; fi
- if [[ -e ~/docker/image.tar ]]; then docker load -i ~/docker/image.tar; echo "loaded image"; fi
- git describe --tags > version
- docker build -t bids/${CIRCLE_PROJECT_REPONAME,,} . :
timeout: 21600
- mkdir -p ~/docker; docker save "bids/${CIRCLE_PROJECT_REPONAME,,}" > ~/docker/image.tar :
timeout: 21600
- mkdir -p ${HOME}/outputs1 ${HOME}/outputs2
test:
override:
#- docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test1:/bids_dataset -v ${HOME}/outputs1:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} /bids_dataset /outputs participant --participant_label 01 --n_cpus 2 --pipeline_file /cpac_resources/test_pipeline.yaml:
#timeout: 21600
#- docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test1:/bids_dataset -v ${HOME}/outputs1:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} /bids_dataset /outputs participant --participant_label 02 --n_cpus 2 --pipeline_file /cpac_resources/test_pipeline.yaml:
#timeout: 21600
#- docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test1:/bids_dataset -v ${HOME}/outputs1:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} /bids_dataset /outputs group --n_cpus 2:
#timeout: 21600
#- docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test2:/bids_dataset -v ${HOME}/outputs2:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} /bids_dataset /outputs participant --participant_label 01 --n_cpus 2 --pipeline_file /cpac_resources/test_pipeline.yaml:
#timeout: 21600
#- docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test2:/bids_dataset -v ${HOME}/outputs2:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} /bids_dataset /outputs participant --participant_label 02 --n_cpus 2 --pipeline_file /cpac_resources/test_pipeline.yaml:
#timeout: 21600
#- docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test2:/bids_dataset -v ${HOME}/outputs2:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} /bids_dataset /outputs group --n_cpus 2:
#timeout: 21600
- echo "skipping tests":
timeout:21600
deployment:
hub:
owner: BIDS-Apps
tag: /.*/
commands:
- if [[ -n "$DOCKER_PASS" ]]; then echo "deploying!"; docker login -e $DOCKER_EMAIL -u $DOCKER_USER -p $DOCKER_PASS && docker push bids/${CIRCLE_PROJECT_REPONAME,,}:latest; fi :
timeout: 21600
- if [[ -n "$DOCKER_PASS" ]]; then echo "deploying!"; docker login -e $DOCKER_EMAIL -u $DOCKER_USER -p $DOCKER_PASS && docker tag bids/${CIRCLE_PROJECT_REPONAME,,} bids/${CIRCLE_PROJECT_REPONAME,,}:$CIRCLE_TAG && docker push bids/${CIRCLE_PROJECT_REPONAME,,}:$CIRCLE_TAG; fi :
timeout: 21600