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Project dependencies may have API risk issues #6795

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PyDeps opened this issue Mar 23, 2023 · 1 comment
Open

Project dependencies may have API risk issues #6795

PyDeps opened this issue Mar 23, 2023 · 1 comment

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@PyDeps
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PyDeps commented Mar 23, 2023

Hi, In Theano, inappropriate dependency versioning constraints can cause risks.

Below are the dependencies and version constraints that the project is using

nose
numpy
parameterized
requests
scipy
six
sympy

The version constraint == will introduce the risk of dependency conflicts because the scope of dependencies is too strict.
The version constraint No Upper Bound and * will introduce the risk of the missing API Error because the latest version of the dependencies may remove some APIs.

After further analysis, in this project,
The version constraint of dependency six can be changed to >=1.9.0,<=1.16.0.

The above modification suggestions can reduce the dependency conflicts as much as possible,
and introduce the latest version as much as possible without calling Error in the projects.

The invocation of the current project includes all the following methods.

In version six-1.8.0, the API six.raise_from whch is used by the current project in theano/scan_module/scan_op.py is missing.
image

The calling methods from the six
six.iterkeys
six.itervalues
six.reraise
six.iteritems
six.with_metaclass
six.b
six.raise_from
The calling methods from the all methods
flatbody
pygpu.gpuarray.empty
basic_ops.gpuarray_helper_inc_dir
self.get_gpu_context_c_name
general_toposort
_gemm_from_factored_list
GpuDnnSoftmax
myThread.start
out_idx_list.append
self._nodes_removed.update
warnings.filterwarnings
ret_idx.ret_val.op.idx_dtype.op.sorted.op.axis.TopKOp
theano.tensor.elemwise.Sum
sd_csr
s.input_shape.all
keys.setdefault
axis.elemwise.Any
self.BORDER_MODE.c_support_code
distutils.command.build_py.build_py.run
Alloc
numpy.array
SoftmaxWithBias.c_code_cache_version
numpy.product
nd.op.outer_mitsot_outs
theano.compile.mode.get_default_mode.excluding
mod
blocks.append
new_order.input.type.broadcastable.op.__class__
self.use_blas
theano.config.floatX.np.sctypeDict
self.grad
fig.add_subplot.legend
recursive_destroys_finder
i.self.types.values_eq_approx
used_ids.done.StringIO.new_r.theano.compile.debugmode.debugprint.getvalue
cudnn_defs.get_definitions
self.Erfcx.super.impl
true_div
code_gen
re.type.values_eq_approx
Ceil
x.c_lib_dirs
l.strip.append
feature.orderings
seed.as_scalar.astype
theano.tensor.as_tensor_variable.__setitem__
theano.tensor.arange
numpy.absolute
theano.tensor.slinalg.cholesky
A.dtype.startswith
self.__get_expanded_dim
obj.toposort
LocalOptGroup
Canonizer
out.insert
as_tensor_variable
Composite
attach
reverse_dict
impl
random_projection
new_dims.append
nose.tools.assert_raises
timings.sort
len.DimShuffle
ContextNotDefined
numpy.arange.copy
sp_sum
theano.tensor.blas.blas_header_version
test.test_gradinput
self.axis.iteritems.value.axis.axis.x.type.broadcastable.axis.Rebroadcast
theano.scan_module.scan_op.Scan.inner_sitsot
eye
len.type
node.op.unshared.node.op.num_groups.node.op.filter_dilation.node.op.subsample.node.op.border_mode.CorrMM_gradInputs
mode.Choose
Subtensor
self.expand_in
Corr3dMM_gradWeights
self.get_lop_op.type
apply_local_dimshuffle_lift
dtype.theano.scalar.Scalar.make_variable
self.type
theano.gof.cc.get_module_cache.refresh
ctc_available
x.c_header_dirs
theano.tensor.basic.le
indices.ndim.basic.TensorType
os.path.normcase
theano.tensor.type.TensorType.zeros_like
var_name
as_tensor_variable.reshape
post_thunk_clear.append
theano.tensor.prod
numpy.fft.irfftn
l.pop
self.items
theano.gof.cc.failure_code
potrf_bufferSize
self.variable_strides.get
theano.tensor.matrix.type
self._gw_fft
Trunc
os.path.dirname
ArcTanh
UnaryScalarOp.__hash__
length.range.list.difference.input.type.broadcastable.dim_shuffle
theano.compat.DefaultOrderedDict
DeviceParam
self.get_node_infer_shape
CuDNNV51ConvCaseGenerator
Maker
kern.type.clone.filter_variable
self.get_lop_op
theano.gof.opt.TopoOptimizer.optimize
self.MaxPoolRop.super.c_headers
self.__setup_node__
nd.op.outer_nitsot
self.CorrMM_gradWeights.super.c_code_helper
sub_policy
_structured_dot
theano.tensor.nnet.corr.CorrMM
shutil.move
theano.tensor.nnet.blocksparse.sparse_block_gemv_inplace
try_march_flag
movable.append
six.raise_from
ctx_name.y_idx.type.broadcastable.x.type.dtype.GpuArrayType
subtensor.GpuAdvancedIncSubtensor1_dev20
numpy.int32
plus_or_dot
fig.add_subplot.plot
uniform
self.AdvancedIncSubtensor.super.make_node
theano.gpuarray.tests.check_dnn_conv.CheckDnn.print_infos
get_loop_strides
node.op.c_code_cache_version_apply
self.reciprocal
self.GpuCorrMM_gradInputs.super.__init__
copy.copy._k_reduce_buf_multiple
l.strip
in1.astype
pydot.Dot.add_subgraph
x_.shape.x_flat.reshape.transpose
theano.tensor.floor
o_fn
theano_dtype
Invert
LeafPrinter.process
to_del.append
theano.gof.opt.PatternSub
self.make_node.run_params
opt.excluding
self.update_shape
theano.tensor.as_tensor_variable.__getitem__
and_
render
Usmm
theano.tensor.extra_ops.repeat
theano.scan_module.scan_utils.equal_computations
datetime.datetime.now
Count
h.pop
baseline.values
_type.c_lib_dirs
merge_two_slices
copy.copy.summary
self.__dict__.clear
inputs.type.context_name.GpuFromHost
self.deepcopy
get_lines.split
shf.reshape.dimshuffle
to_sum.append
fname.open.close
AddConfigVar
gradients.dimshuffle.grad_op.T.basic.batched_dot.dimshuffle
self.op_may_fail_with_subsample
self.unshared.self.num_groups.self.filter_dilation.self.filter_flip.self.subsample.self.border_mode.self.kshp.self.imshp.AbstractConv2d_gradWeights
exec_multilayer_conv_nnet
self.seq_opt
_type.c_no_compile_args
_is_const
operator_eq_cplx
collections.OrderedDict.items
z_dims.append
theano.compile.OpFromGraph.make_node
app.add_stylesheet
theano.gof.Optimizer.__init__
elemwise.Elemwise
theano.tensor.basic.maximum
ConvCase
clone
ind2.ind1.x.np.asarray.flatten
theano.tensor.subtensor.Subtensor
irfft_op
attr.startswith
_get_atol_rtol
self.num_groups.self.filter_dilation.self.subsample.self.border_mode.Corr3dMM_gradInputs
LessEqualSS
sphinx_rtd_theme.get_html_theme_path
self.__infer_shape
scipy.special.psi
self.convert_variable
_prepare_batch_normalization_axes
broadcastable.kern.type.clone
self.f.sync
inputs.dtype.inputs.dtype.op.axis.GpuDnnReduction
reduced.dimshuffle
_sum_grad_over_bcasted_dims
theano.gof.link.gc_helper
outer_input_indices.append
pygpu.concatenate
CodeBlock
inputs.astype.dimshuffle
result.cache.get
rfft_op
ret.requiring.requiring
run_with_tensortype_filter_check
self.GpuKernelBase.super.c_header_dirs
theano.tensor.as_tensor_variable.min
spec_pos
theano.gof.cmodule.GCC_compiler.compile_args
list.reverse
GpuGer
self.mitmot_taps
self.L_op
theano.tensor.basic.as_tensor_variable.max
switch_neg_step
theano.tensor.zeros_like.flatten
theano.gof.MergeOptimizer
usmm_csc_dense_inplace
self.mode.self.ignore_border.self.ndim.AveragePoolGrad
init_dev
CGemv
precision.dtype.self.ndim.algo.cudnn_conv_case_generator.fwd.get_cases
theano.gradient.grad_undefined
gf
x.op.__class__.__name__.lower.startswith
the_split
theano.gpuarray.basic_ops.GpuFromHost
self.simplify_constants
find_node
self.c_compiler.compile_str
theano.tensor.basic.ones_like
opt.register_opt2
theano.tensor.basic.sqrt
self.outer_shared
theano.gof.cc.CLinker.accept.make_thunk
BinaryScalarOp.__init__
node.op.dtype.opt_type
d.get.get
TriGamma.st_impl
theano.scalar.basic.Apply
self.info.get
git_versions_from_keywords
chol_x.T.dot
theano.tensor.DimShuffle
theano.tensor.as_tensor_variable.dot
self.AND.super.c_code_cache_version
open.write
numpy.linalg.det
self.msg.replace.replace.Assert
self.params_type.c_code_cache_version
self.get_grad
b_shape.insert
new_r.equivalence_sets.update
_topk_py_impl
param_list.append
theano.gof.utils.from_return_values
GraphToGPUDB
AddSSData
self.num_groups.self.filter_dilation.self.subsample.self.border_mode.GpuCorr3dMM_gradInputs
theano.tensor.as_tensor_variable.sum
ctc.GpuConnectionistTemporalClassification.local_optimizer
MulSS
self.fields.index
os.path.dirname.startswith
node.op.ops_with_inner_function.free
dnn_batch_normalization_test.dimshuffle
theano.tensor.basic.constant.signature
copt.merge_profile
GpuArraySignature
self.variables.set.difference
slicetype
csm_grad
type_instance.c_support_code
theano.configparser.BoolParam
idx.append
numpy.random.uniform
Mul
self.cpu_conv_class
Choose
RandomStateType
scan_perform.scan_perform.get_version
new_scan_args.inner_out_nit_sot.extend
rest.append
theano.tensor.flatten
reindent.Reindenter
GpuPool
numpy.ndarray.copy
theano.gpuarray.blas.gpu_dot22
ScalarSigmoid
theano.gof.LocalGroupDB
theano.sparse.utils.hash_from_sparse
shape_infer
theano.gof.cmodule.DynamicModule
multinomial.ChoiceFromUniform
actual.dimshuffle
theano.sparse.basic.as_sparse_variable.type
theano.scalar.as_common_dtype
run_command
prof2.index
theano.gof.optdb.LocalGroupDB
theano.gof.MethodNotDefined
patternbroadcast
self.Param.super.__init__
numpy.dtype
self.rng.randn
op.join
add_clear_storage
self.fields.join.encode
dct.get
numpy.random.RandomState.get_state
self._sympy_c_code.split
abs_
src.encode.encode
Compositef32
f.__file__.os.path.split.os.path.join.open.read
x.dtype.broadcastable.basic.TensorType.append
self.attach_updater
self._update
ob.input.type.dtype.TensorType
theano.tensor.as_tensor_variable.sort_indices
self.types.t.t.str.join.encode
dtype.scalar.Scalar
_is_sparse_variable
ScalarSharedVariable
test.test_gradweight_runtime_algorithms
self.lines.insert
nw_x.type.filter
scipy.special.i0
redux.append
self.Sgn.super.c_code_cache_version
GreaterEqualSS
itertools.product
mode.QRFull
p.replace.replace
dnn_gradweight
theano.Out
collections.deque.extendleft
precision.dtype.self.ndim.algo.cudnn_conv_case_generator.gw.get_cases
theano.gof.Apply
new_l_names.index
pattern.xmax.broadcastable.DimShuffle
T.arange
rval1_scal.pow2_scal.theano.scalar.Composite.Elemwise.make_node
train
input_.clone
cond.zeros_like
version_type
SparseFromDense
components.sum
N.rng.randint.astype
dropoutdesc_type
std_include_dirs
six.BytesIO
OpFromGraph._filter_rop_var
theano.tensor.basic.Tensor
self.typeInfer
extraopts.append
theano.tensor.elemwise.DimShuffle
op.__class__.make_node
numpy.random.random
o.dimshuffle.reshape
numpy.isscalar
used_ids.done.StringIO.new_r.debugprint.getvalue
node.fgraph.shape_feature.shape_ir
_unitary
bcast.self.dtype.inp.type.clone
hash
outer_fun
GpuCorrMM_gradInputs
filtersflipped.reshape.reshape
inspect.getsourcelines
ctx_name.img.dtype.GpuAllocEmpty
is_mul
Gemv
num_groups.GpuDnnConv
dx_terms.append
scipy.special.erfcx
power
self.inplace_pattern.keys
dtype.theano.tensor.opt.MakeVector
theano.tensor.log2
Dot22
get_inp_idx
theano.gof.utils.get_variable_trace_string
exp_float32_op
theano.gof.toolbox.NodeFinder
leaves.pop
out_map.get
six.reraise
encompasses_broadcastable
mitmot_idx.new_mit_mot_out_slices.remove
i.x_shp.arange.dimshuffle
input.type.dtype_specs
all_orderings.append
theano.tensor.as_tensor_variable.dimshuffle
six.b.endswith
theano.gpuarray.cudnn_defs.get_definitions.bwd_filter_algo_supports_dtype_config
opt.transform
isinf_
self.mode.np.cumprod.np.cumsum
n.op.connection_pattern
var.clients.append
new_outer_out_mit_mot.append
fn_gov
self.optimizer_profile.print_profile
node.op.__class__.__name__.lower.startswith
save_commit_message
dr_vals.get
git_describe.rindex.rindex
self.num_groups.self.filter_dilation.self.subsample.self.border_mode.GpuCorr3dMM
inputs.astype
t.upper.upper
SoftmaxWithBias
conv.get
b.broadcastable.GpuDimShuffle
property
gpu_reconstruct_graph
numpy.distutils.misc_util.get_numpy_include_dirs
root.GITS.run_command.strip.strip
CSMProperties
rlist.append
broadcastable_to_str
theano.scan_module.scan_op.Scan.inner_mitsot
op.R_op
self.CAReduceDtype.super.__setstate__
theano.misc.ordered_set.OrderedSet.i.self.view_o.setdefault.add
get_module_cache.module_from_key
os.path.getsize
os.rmdir
k.owner.outputs.index
AdvancedIncSubtensor
self.loaded_key_pkl.remove
rightdims.leftdims.GpuReshape
MPIRecvWait
dnn_present
theano.tensor.basic.eq
copy.copy._acc_dtype
EquilibriumOptimizer
theano.compile.shared_constructor
self.TensorVariable.super.__init__
theano.compile.optdb.register
self.noinput_nodes.discard
self.CEnumType.super.c_code_cache_version
self.unshared.self.num_groups.self.filter_dilation.self.subsample.self.border_mode.CorrMM_gradWeights
_make_rnn_desc
Expm1
self.scale_numpy_arrays_inplace
TestDnnConv2D
self.lscalar_one.equals
v.type.filter_variable
filter_dilation.subsample.border_mode.GpuCorr3dMM
copy.copy.add
theano.scalar.basic.upcast
theano.tensor.nnet.blocksparse.sparse_block_outer_inplace
str
self.class_impl
numpy.asarray.all
context_name.inp2.broadcastable.inp1.dtype.GpuArrayType
pattern.get
self.dy.self.dx.zz.copy
axis.CumOp
pattern.clone
v.get_value
self.EquilibriumDB.super.query
numpy.complex64
theano.tensor.basic.sum.astype
compose_impl
op.outer_seqs.dimshuffle
i.opts.print_profile
diff_file.write
as_sparse_variable.type
inplace_pattern.new_scal.self.op
numpy.std
numpy.sin.zeros_like
old_f
mean
self.kernel_version
log_thunk_trace
round_half_away_from_zero
self.ConvOp.super.__init__
compute_uv.full_matrices.SVD
copy.copy.pop
potrs
v.zeros_like.astype
dnn_conv
theano.tensor.opt.ShapeFeature
theano.misc.windows.subprocess_Popen.rstrip
os.system
basic_ops.infer_context_name._RNNParamSize
Exp2
tensor.zeros_like
crossentropy_categorical_1hot_grad
NotThisMethod
six.moves.reduce.remove
c.self.local_optimizers_map.setdefault.append
init_tasks.append
seq.append
theano.scan_module.scan_utils.isNaN_or_Inf_or_None
imp.find_module
getrf_bufferSize
theano.config.blas.ldflags.split
offset.idx.mitmot_inp_taps.append
pycuda.compiler.SourceModule
specify_shape
six.moves.cPickle.load.add_key
self.SequenceDB.super.register
new_then_branch.append
GpuFromHost
theano.tensor.subtensor.make_constant.append
self.n_streams
theano.gof.link.PerformLinker
scipy.signal.signaltools._valfrommode
GpuKernelBase.gpu_kernels
StructuredDotGradCSC
NoCuDNNRaise
numpy.getbuffer
self.scalar_op.c_support_code
plugins.append
constant
os.makedirs
collections.defaultdict.update
theano.scan_module.scan
type.EQ_MAP.get
keyring.set_password
ConfigParser.SafeConfigParser.has_option
open.flush
AbstractBatchNormInference
theano.gof.DestroyHandler
theano.tensor.elemwise.DimShuffle.make_node
self.check_key
self.summary_nodes
sum
copy.copy.c_code_reduce_01X
self.section_re.split
node_output_size.append
self.ndim.self.mode.self.ignore_border.DownsampleFactorMaxGradGrad
self.odtype.theano.scalar.Scalar.dtype_specs
pre_v_shape.append
localop
belongs_to_set_idx.all_sets.append
GetCheckpoint
theano.tensor.nlinalg.trace
complex
assert_op
theano.tensor.pow
ctypes.addressof
theano.tensor.ceil_intdiv
a_shape.insert
test.test_fwd
theano.gof.cmodule.DynamicModule.add_include
cast.flatten
theano.gof.MissingInputError
theano.tensor.elemwise.CAReduceDtype.make_node
logging.getLogger
theano.tensor.basic.invert
self._as_tuple_of_tuples
self.dtype.scal.get_scalar_type.c_compile_args
self.ttype.values_eq
DisconnectedInputError
six.moves.StringIO.r.debugprint.getvalue
theano.tensor.nonzero
count_minimum_peak
is_double_config
var.type.context_name.var.type.dtype.GpuAllocEmpty
out.eliminate_zeros
GpuDnnPoolGrad
inline_reduce_max
theano.tensor.opt.register_specialize_device
IncSubtensor
theano.tensor.basic.nonzero_values
platform.platform
numpy.minimum.argmax
type_instance.c_init
mode.GpuDnnPool
input.clone
outputs.gpu_x.owner.op.transfer
self._lop_op
out.__len__
theano.configdefaults.config.init_gpu_device.startswith
s.np.arange.reshape
OpenMPOp.test_gxx_support
bcast.append
os.path.islink
theano.tensor.basic.prod.insert
tensout.ndim.tensor.DimShuffle
structured_dot_grad
theano.tensor.opt.local_elemwise_fusion_op
scipy.linalg.cholesky
inline_reduce_sum
numpy.prod
json.dumps
Images2Neibs
set.update
as_sparse_variable.__class__
self.assertFunctionContains
make_vector
gpu_cast_op
gw.np.diag.dot
basic_ops.empty_like
theano.tensor.basic.max_and_argmax
thunk1
GradClip
self.wrapper.self.linkers.self.type.accept
input
theano.tensor.basic.Rebroadcast
self.printers.insert
self._dilations
p_size.cur_pos.cur_pos.x.reshape
value.np.isnan.sum
UPLO.Eigh
typename
compute_out
numpy.tri
getattr
s.prod.out.astype
TopoOptimizer
self.Constant._as_TensorVariable
tmp_input.index
theano.tensor.elemwise.CAReduceDtype.make_node.copy
Clip
self.CuDNNV6.super.bwd_data_algo_supports_dtype_config
d.copy.get
as_scalar
self.tag_to_remove.extend
theano.tensor.Rop
reverse
idx.mitmot_out_taps.append
theano.printing.pd.Dot.add_node
CorrMM_gradWeights
DoubleOp
basic_ops.infer_context_name._DropoutDescriptor
dnn_batch_normalization_train
theano.gof.link.Container
self.inner_non_seqs
theano.grad
types_string.hashlib.sha256.hexdigest
op.old_op.global_fn
outer_inp_sitsot.append
theano.compat.configparser.SafeConfigParser.ConfigParser.ConfigParser.PY3.read
v.owner.outputs.index
self.rng.normal
theano.gof.fg.FunctionGraph.destroyers
set_type.remove
reduce
node.op.make_py_thunk
x.astype.astype
sys.stderr.write
u.owner.op
r.owner.op.type.self.printers_dict.process
DeepCopyOp
self.EquilibriumOptimizer.super.add_requirements
locals.strip
local_gpua_specifyShape_graph
self.linker.clone
item.equals
trans_solve_op
itertools.count
v.astype
self.test_fwd_runtime_algorithms
sub.copy.copy
numpy.linalg.norm
c.get_value.sync
d.copy.copy
inp.type.clone
scipy.special.jv
theano.tensor.basic.div_proxy
verbose.unroll_patch.unroll_kern.unroll_batch.conv_mode.ss.ss.bsize.nkern.kshp.imshp.ConvOp
get_module_cache
node.inputs.type.dtype_specs
ipt.zeros_like
_grad_helper
inputs.zeros_like.astype
fgraph.destroy_handler.root_destroyer.get
search_make_one_sub
theano.compile.optdb.add_tags
zip_file.write
six.b
w.type.append
theano.gof.EquilibriumDB
basic_ops.gpu_contiguous.append
string.split
theano.tensor.opt.local_rebroadcast_lift.transform
self.fgraph.orderings.get
v.owner.op.perform
_Linker
as_sparse_variable.zeros_like
self.inner_mitmot_outs
self.RandomStreams.super.__init__
o.append
self.copy_into
feats.rng.randn.astype
theano.tensor.basic.constant
self.known_fgraphs.add
theano.compile.function_module.std_fgraph
theano.tensor.basic.extract_constant
theano.configparser.IntParam
self.gpu_kernels
_scal_elemwise_with_nfunc
rval.extend
in2.astype
TensorSolve
self.Corr3dMM_gradWeights.super.c_code_helper
self.BNComposite.super.__init__
theano.compile.pfunc.pfunc
theano.gof.graph.io_toposort
local_dimshuffle_lift.transform
SparseType.may_share_memory
clone_d.setdefault
GpuToGpu
i.owner.op.scalar_op
digest
self.Chi2SF.super.impl
x.type.format.out_dtype.SparseType
run_mercurial_command
theano.tensor.scalar_from_tensor
numpy.isnan
Psi.st_impl
GammaInc.st_impl
self.__query__
numpy.exp.sum
theano.gof.cmodule.GCC_compiler.try_compile_tmp
theano.tensor.as_tensor_variable.zeros_like
alloc_diag
theano.tensor.ones_like
self.__setstate__
theano.compile.mode.get_default_mode.including.excluding
recursive_merge
self.tri0
MakeVector
dnn_case.is_bwd_data
used_ids.done.StringIO.r.theano.compile.debugmode.debugprint.getvalue
c_no_compile_args_list.extend
input.dimshuffle.dimshuffle
inp.clone
theano.tests.run_tests_in_batch.main
self.allow_gc.self.type.accept
theano.gof.CLinker.cmodule_key_
pvi.astype
six.b.split
tmp_s_input.append
PPrinter
temp
Cast
theano.tensor.arctan
self.direction_mode.self.rnn_mode.GpuDnnRNNOp
transfer._others.append
os.getenv.split
NEQ
_val.dimshuffle.reshape
theano.tensor.basic.get_vector_length.extend
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os.path.split
HStack
clip
Prepend_scalar_constant_to_each_row
UltraFastScalarSigmoid
pydot.Dot.write
cls._try_compile_tmp
self.make_vm
self.variable_shape.get
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self.d.setdefault
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var.type.may_share_memory
numpy.random.rand.astype
...

@developer
Could please help me check this issue?
May I pull a request to fix it?
Thank you very much.

@nouiz
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nouiz commented Mar 30, 2023

Theano isn't developed anymore. See the warning at the top of this readme:
https://github.com/Theano/Theano

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