/
neighbours.py
574 lines (530 loc) · 26.4 KB
/
neighbours.py
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from __future__ import absolute_import, print_function, division
from theano import Op, Apply
from theano.gof import ParamsType
from theano.tensor.nnet.neighbours import Images2Neibs
import theano.tensor as T
try:
from pygpu import gpuarray
except ImportError:
pass
from .basic_ops import (as_gpuarray_variable, GpuKernelBase, Kernel,
infer_context_name)
from .type import GpuArrayType, gpu_context_type
class GpuImages2Neibs(GpuKernelBase, Images2Neibs, Op):
"""
Images2Neibs for the GPU.
"""
params_type = ParamsType(mode=Images2Neibs.BORDER_MODE, context=gpu_context_type)
def get_params(self, node):
return self.params_type.get_params(self, context=node.inputs[0].type.context)
def make_node(self, ten4, neib_shape, neib_step=None):
ten4 = as_gpuarray_variable(ten4, infer_context_name(ten4))
neib_shape = T.as_tensor_variable(neib_shape)
if neib_step is None:
neib_step = neib_shape
else:
neib_step = T.as_tensor_variable(neib_step)
assert ten4.ndim == 4
assert neib_shape.ndim == 1
assert neib_step.ndim == 1
assert neib_shape.dtype in T.integer_dtypes
assert neib_step.dtype in T.integer_dtypes
return Apply(self, [ten4, neib_shape, neib_step],
[GpuArrayType(broadcastable=(False, False),
dtype=ten4.type.dtype,
context_name=ten4.type.context_name)()])
def c_code_cache_version(self):
return (14,)
def c_headers(self):
return ['<numpy_compat.h>', '<gpuarray/types.h>']
def gpu_kernels(self, node, nodename):
dtype_ten4 = node.inputs[0].dtype
dtype_z = node.outputs[0].dtype
flags = Kernel.get_flags(dtype_ten4, dtype_z)
type_ten4 = gpuarray.dtype_to_ctype(dtype_ten4)
type_z = gpuarray.dtype_to_ctype(dtype_z)
# `BORDER_MODE`'s c_support_code() contains C constants definitions that are useful here.
mode_constants = self.BORDER_MODE.c_support_code()
kernels = []
kname = "k_multi_warp_less"
k_var = "k_multi_warp_less_" + nodename
code = """#include "cluda.h"
// a version that uses less registers but doesn't work in all cases.
%(mode_constants)s
KERNEL void %(kname)s(
const ga_int mode,
const ga_int nb_batch,
const ga_int nb_stack,
const ga_int height,
const ga_int width,
const ga_int c,
const ga_int d,
const ga_int step_x,
const ga_int step_y,
const ga_int grid_c,
const ga_int grid_d,
const ga_size stride0, const ga_size stride1,
const ga_size stride2, const ga_size stride3,
GLOBAL_MEM const %(type_ten4)s * global_ten4, const ga_size offset_ten4,
const ga_size out_s0, const ga_size out_s1,
GLOBAL_MEM %(type_z)s * global_out, const ga_size offset_out
)
{
const ga_int wrap_centered_half_idx_shift_x = c/2;
const ga_int wrap_centered_half_idx_shift_y = d/2;
global_ten4 = (GLOBAL_MEM const %(type_ten4)s *)(((GLOBAL_MEM char *)global_ten4)+offset_ten4);
global_out = (GLOBAL_MEM %(type_z)s *)(((GLOBAL_MEM char *)global_out)+offset_out);
for(ga_int tblock = GID_0*LDIM_2+LID_2;
tblock<nb_batch*nb_stack*grid_c*grid_d;
tblock+=GDIM_0*LDIM_2){
const ga_int b = tblock%%grid_d;
ga_int left = tblock/grid_d;
const ga_int a = left%%grid_c;
left = left/grid_c;
const ga_int s = left%%nb_stack;
left = left/nb_stack;
const ga_int n = left;
if(n>nb_batch)continue;
if(s>nb_stack)continue;
if(a>grid_c)continue;
if(b>grid_d)continue;
ga_int z_row = b + grid_d*(a + grid_c*
(s + nb_stack*n));
ga_int i = LID_1; // loop over c
{
ga_int ten4_2 = i + a * step_x;
if(mode == MODE_WRAP_CENTERED) {
ten4_2 -= wrap_centered_half_idx_shift_x;
if ( ten4_2 < 0 )
ten4_2 += height;
else if (ten4_2 >= height)
ten4_2 -= height;
} else if (mode == MODE_HALF) {
ten4_2 -= wrap_centered_half_idx_shift_x;
} else if (mode == MODE_FULL) {
ten4_2 -= c - 1;
}
ga_int j = LID_0; // loop over d
{
ga_int ten4_3 = j + b * step_y;
if(mode == MODE_WRAP_CENTERED){
ten4_3 -= wrap_centered_half_idx_shift_y;
if ( ten4_3 < 0 )
ten4_3 += width;
else if (ten4_3 >= width)
ten4_3 -= width;
} else if (mode == MODE_HALF) {
ten4_3 -= wrap_centered_half_idx_shift_y;
} else if (mode == MODE_FULL) {
ten4_3 -= d - 1;
}
ga_int z_col = j + d * i;
ga_int z_idx = z_col * out_s1 +
z_row * out_s0;
if(ten4_2 < 0 || ten4_2 >= height || ten4_3 < 0 || ten4_3 >= width){
global_out[z_idx] = 0;
} else {
ga_int ten4_idx = stride3*ten4_3 +
stride2*ten4_2 +
stride1*s + stride0*n;
global_out[z_idx] = global_ten4[ten4_idx];
}
}
}
}
}""" % dict(kname=kname, type_ten4=type_ten4, type_z=type_z, mode_constants=mode_constants)
params = [
'intc',
'intc', 'intc', 'intc', 'intc', 'intc', 'intc',
'intc', 'intc', 'intc', 'intc',
'uintp', 'uintp', 'uintp', 'uintp',
gpuarray.GpuArray, 'uintp',
'uintp', 'uintp',
gpuarray.GpuArray, 'uintp',
]
kernels.append(Kernel(code=code, name=kname, params=params,
flags=flags, objvar=k_var))
kname = "k_multi_warp"
k_var = "k_multi_warp_" + nodename
code = """#include "cluda.h"
%(mode_constants)s
KERNEL void %(kname)s(
const ga_int mode,
const ga_int nb_batch,
const ga_int nb_stack,
const ga_int height,
const ga_int width,
const ga_int c,
const ga_int d,
const ga_int step_x,
const ga_int step_y,
const ga_int grid_c,
const ga_int grid_d,
const ga_size stride0, const ga_size stride1,
const ga_size stride2, const ga_size stride3,
GLOBAL_MEM const %(type_ten4)s * global_ten4, const ga_size offset_ten4,
const ga_size out_s0, const ga_size out_s1,
GLOBAL_MEM %(type_z)s * global_out, const ga_size offset_out
)
{
const ga_int wrap_centered_half_idx_shift_x = c/2;
const ga_int wrap_centered_half_idx_shift_y = d/2;
global_ten4 = (GLOBAL_MEM const %(type_ten4)s *)(((GLOBAL_MEM char *)global_ten4)+offset_ten4);
global_out = (GLOBAL_MEM %(type_z)s *)(((GLOBAL_MEM char *)global_out)+offset_out);
for(ga_int tblock = GID_0*LDIM_2+LID_2;
tblock<nb_batch*nb_stack*grid_c*grid_d;
tblock+=GDIM_0*LDIM_2){
const ga_int b = tblock%%grid_d;
ga_int left = tblock/grid_d;
const ga_int a = left%%grid_c;
left = left/grid_c;
const ga_int s = left%%nb_stack;
left = left/nb_stack;
const ga_int n = left;
if(n>nb_batch)continue;
if(s>nb_stack)continue;
if(a>grid_c)continue;
if(b>grid_d)continue;
ga_int z_row = b + grid_d*(a + grid_c*
(s + nb_stack*n));
// loop over c
for (ga_int i = LID_1; i < c; i+=LDIM_1)
{
ga_int ten4_2 = i + a * step_x;
if(mode == MODE_WRAP_CENTERED) {
ten4_2 -= wrap_centered_half_idx_shift_x;
if ( ten4_2 < 0 )
ten4_2 += height;
else if (ten4_2 >= height)
ten4_2 -= height;
} else if (mode == MODE_HALF) {
ten4_2 -= wrap_centered_half_idx_shift_x;
} else if (mode == MODE_FULL) {
ten4_2 -= c - 1;
}
// loop over d
for (ga_int j = LID_0; j < d; j+=LDIM_0)
{
ga_int ten4_3 = j + b * step_y;
if(mode == MODE_WRAP_CENTERED) {
ten4_3 -= wrap_centered_half_idx_shift_y;
if ( ten4_3 < 0 )
ten4_3 += width;
else if (ten4_3 >= width)
ten4_3 -= width;
} else if (mode == MODE_HALF) {
ten4_3 -= wrap_centered_half_idx_shift_y;
} else if (mode == MODE_FULL) {
ten4_3 -= d - 1;
}
ga_int z_col = j + d * i;
ga_int z_idx = z_col * out_s1 +
z_row * out_s0;
if(ten4_2 < 0 || ten4_2 >= height || ten4_3 < 0 || ten4_3 >= width){
global_out[z_idx] = 0;
} else {
ga_int ten4_idx = stride3*ten4_3 +
stride2*ten4_2 +
stride1*s + stride0*n;
global_out[z_idx] = global_ten4[ten4_idx];
}
}
}
}
}
""" % dict(kname=kname, type_ten4=type_ten4, type_z=type_z, mode_constants=mode_constants)
params = [
'intc',
'intc', 'intc', 'intc', 'intc', 'intc', 'intc',
'intc', 'intc', 'intc', 'intc',
'uintp', 'uintp', 'uintp', 'uintp',
gpuarray.GpuArray, 'uintp',
'uintp', 'uintp',
gpuarray.GpuArray, 'uintp',
]
kernels.append(Kernel(code=code, name=kname, params=params,
flags=flags, objvar=k_var))
return kernels
def c_support_code(self):
return """
template <typename T>
static T ceil_intdiv(T a, T b)
{
return (a/b) + ((a % b) ? 1: 0);
}
"""
def c_code(self, node, name, inp, out, sub):
err_check = """
if (err != GA_NO_ERROR) {
PyErr_Format(PyExc_RuntimeError,
"gpuarray error: *fptr: %%s.",
GpuKernel_error(fptr, err));
%(fail)s;
}
""" % dict(fail=sub['fail'])
# NB: To reduce C code variability:
# For itemsize_ten4, I use GpuArray_ITEMSIZE(&ten4->ga) instead of np.dtype(node.inputs[0].dtype).itemsize
# For itemsize_z, I use itemsize_ten4, as ten4 and z have same type properties (deduced from make_node)
# For typecode_z, I use ten4->ga.typecode (for same reason as above)
return """
int grid_c = -1;
int grid_d = -1;
size_t itemsize_ten4 = GpuArray_ITEMSIZE(&%(ten4)s->ga);
size_t itemsize_z = itemsize_ten4;
int typecode_z = %(ten4)s->ga.typecode;
{
if (PyGpuArray_NDIM(%(ten4)s) != 4)
{
PyErr_Format(PyExc_TypeError,
"GpuImages2Neibs: pvals wrong rank");
%(fail)s;
}
if (PyArray_NDIM(%(neib_shape)s) != 1)
{
PyErr_Format(PyExc_TypeError,
"GpuImages2Neibs: unis wrong rank");
%(fail)s;
}
if (PyArray_DIMS(%(neib_shape)s)[0] != 2)
{
PyErr_Format(PyExc_ValueError,
"GpuImages2Neibs: neib_shape has to contain two"
" elements");
%(fail)s;
}
const int c = *(npy_%(dtype_neib_shape)s*) PyArray_GETPTR1(
%(neib_shape)s, 0);
const int d = *(npy_%(dtype_neib_shape)s*) PyArray_GETPTR1(
%(neib_shape)s, 1);
const npy_intp step_x = (npy_intp) *(npy_%(dtype_neib_step)s*)
PyArray_GETPTR1(%(neib_step)s, 0);
const npy_intp step_y = (npy_intp) *(npy_%(dtype_neib_step)s*)
PyArray_GETPTR1(%(neib_step)s, 1);
if (step_x <=0 || step_y <=0)
{
PyErr_Format(PyExc_ValueError,
"neib_step wrong step ; values <= 0. Got %%lld %%lld.",
(long long) step_x, (long long) step_y);
%(fail)s;
}
if (c <=0 || d <=0)
{
PyErr_Format(PyExc_ValueError,
"neib_shape values <= 0. Got %%lld %%lld.",
(long long)c, (long long)d);
%(fail)s;
}
if (%(params)s->mode == MODE_WRAP_CENTERED) {
if (c%%2!=1 || d%%2!=1){
PyErr_Format(PyExc_TypeError,
"GpuImages2Neibs: in mode wrap_centered need patch with odd shapes");
%(fail)s;
}
if ( PyGpuArray_DIMS(%(ten4)s)[2] < c ||
PyGpuArray_DIMS(%(ten4)s)[3] < d)
{
PyErr_Format(PyExc_TypeError,
"GpuImages2Neibs: in wrap_centered mode,"
" don't support image shapes smaller then"
" the patch shapes: neib_shape=(%%d,%%d),"
" ten4[2:]=[%%d,%%d]",
c, d, PyGpuArray_DIMS(%(ten4)s)[2],
PyGpuArray_DIMS(%(ten4)s)[3]);
%(fail)s;
}
grid_c = ceil_intdiv(((PyGpuArray_DIMS(%(ten4)s))[2]),
(size_t)step_x);
grid_d = ceil_intdiv(((PyGpuArray_DIMS(%(ten4)s))[3]),
(size_t)step_y);
} else if (%(params)s->mode == MODE_VALID) {
if ( ((PyGpuArray_DIMS(%(ten4)s))[2] < c) ||
((((PyGpuArray_DIMS(%(ten4)s))[2]-c) %% step_x)!=0))
{
PyErr_Format(PyExc_TypeError, "GpuImages2Neibs:"
" neib_shape[0]=%%d, neib_step[0]=%%d and"
" ten4.shape[2]=%%d not consistent",
c, step_x,
PyGpuArray_DIMS(%(ten4)s)[2]);
%(fail)s;
}
if ( ((PyGpuArray_DIMS(%(ten4)s))[3] < d) ||
((((PyGpuArray_DIMS(%(ten4)s))[3]-d) %% step_y)!=0))
{
PyErr_Format(PyExc_TypeError, "GpuImages2Neibs:"
" neib_shape[1]=%%d, neib_step[1]=%%d and"
" ten4.shape[3]=%%d not consistent",
d, step_y,
PyGpuArray_DIMS(%(ten4)s)[3]);
%(fail)s;
}
//number of patch in height
grid_c = 1+(((PyGpuArray_DIMS(%(ten4)s))[2]-c)/step_x);
//number of patch in width
grid_d = 1+(((PyGpuArray_DIMS(%(ten4)s))[3]-d)/step_y);
} else if (%(params)s->mode == MODE_IGNORE_BORDERS) {
//number of patch in height
grid_c = 1+(((PyGpuArray_DIMS(%(ten4)s))[2]-c)/step_x);
//number of patch in width
grid_d = 1+(((PyGpuArray_DIMS(%(ten4)s))[3]-d)/step_y);
} else if (%(params)s->mode == MODE_HALF) {
if ( ((PyGpuArray_DIMS(%(ten4)s))[2] < c) ||
((((PyGpuArray_DIMS(%(ten4)s))[2]-(c%%2)) %% step_x)!=0))
{
PyErr_Format(PyExc_TypeError, "GpuImages2Neibs:"
" neib_shape[0]=%%d, neib_step[0]=%%d and"
" ten4.shape[2]=%%d not consistent",
c, step_x,
PyGpuArray_DIMS(%(ten4)s)[2]);
%(fail)s;
}
if ( ((PyGpuArray_DIMS(%(ten4)s))[3] < d) ||
((((PyGpuArray_DIMS(%(ten4)s))[3]-(d%%2)) %% step_y)!=0))
{
PyErr_Format(PyExc_TypeError, "GpuImages2Neibs:"
" neib_shape[1]=%%d, neib_step[1]=%%d and"
" ten4.shape[3]=%%d not consistent",
d, step_y,
PyGpuArray_DIMS(%(ten4)s)[3]);
%(fail)s;
}
//number of patch in height
grid_c = 1+(((PyGpuArray_DIMS(%(ten4)s))[2]-(c%%2))/step_x);
//number of patch in width
grid_d = 1+(((PyGpuArray_DIMS(%(ten4)s))[3]-(d%%2))/step_y);
} else if (%(params)s->mode == MODE_FULL) {
if ( ((PyGpuArray_DIMS(%(ten4)s))[2] < c) ||
( (((PyGpuArray_DIMS(%(ten4)s))[2]+c-2) %% step_x)!=0))
{
PyErr_Format(PyExc_TypeError,
"neib_shape[0]=%%ld, neib_step[0]=%%ld and"
" ten4.shape[2]=%%ld not consistent",
(long int)c, (long int)step_x,
(long int)(PyGpuArray_DIMS(%(ten4)s)[2]));
%(fail)s;
}
if ( ((PyGpuArray_DIMS(%(ten4)s))[3] < d) ||
( (((PyGpuArray_DIMS(%(ten4)s))[3]+d-2) %% step_y)!=0))
{
PyErr_Format(PyExc_TypeError,
"neib_shape[1]=%%ld, neib_step[1]=%%ld and"
" ten4.shape[3]=%%ld not consistent",
(long int)d, (long int)step_y,
(long int)(PyGpuArray_DIMS(%(ten4)s)[3]));
%(fail)s;
}
//number of patch in height
grid_c = 1+(((PyGpuArray_DIMS(%(ten4)s))[2]+c-2)/step_x);
//number of patch in width
grid_d = 1+(((PyGpuArray_DIMS(%(ten4)s))[3]+d-2)/step_y);
} else {
PyErr_Format(PyExc_TypeError,
"GpuImages2Neibs:: unknown mode %%d", %(params)s->mode);
%(fail)s;
}
// new dimensions for z
const int z_dim1 = c * d;
const int z_dim0 = grid_c
* grid_d
* PyGpuArray_DIMS(%(ten4)s)[1]
* PyGpuArray_DIMS(%(ten4)s)[0];
if ((NULL == %(z)s)
|| (PyGpuArray_DIMS(%(z)s)[0] != z_dim0)
|| (PyGpuArray_DIMS(%(z)s)[1] != z_dim1))
{
Py_XDECREF(%(z)s);
size_t dims[2];
dims[0] = z_dim0;
dims[1] = z_dim1;
%(z)s = pygpu_empty(2, dims, typecode_z,
GA_C_ORDER, %(params)s->context, Py_None);
if (!%(z)s)
{
PyErr_SetString(PyExc_MemoryError, "GpuImages2Neibs:"
" failed to alloc z output");
%(fail)s;
}
}
}
{ // NESTED SCOPE
const int mode = %(params)s->mode;
const int nb_batch = PyGpuArray_DIMS(%(ten4)s)[0];
const int nb_stack = PyGpuArray_DIMS(%(ten4)s)[1];
const int height = PyGpuArray_DIMS(%(ten4)s)[2];
const int width = PyGpuArray_DIMS(%(ten4)s)[3];
const int c = *(npy_%(dtype_neib_shape)s*) PyArray_GETPTR1(
%(neib_shape)s, 0);
const int d = *(npy_%(dtype_neib_shape)s*) PyArray_GETPTR1(
%(neib_shape)s, 1);
const npy_intp step_x = (npy_intp) *(npy_%(dtype_neib_step)s*)
PyArray_GETPTR1(%(neib_step)s, 0);
const npy_intp step_y = (npy_intp) *(npy_%(dtype_neib_step)s*)
PyArray_GETPTR1(%(neib_step)s, 1);
size_t threads_per_block[3] = {d, c, 1};
//get the max threads per blocks
size_t max_threads_dim;
int err = gpucontext_property(%(params)s->context->ctx, GA_CTX_PROP_MAXLSIZE0, &max_threads_dim);
if (err != GA_NO_ERROR){
PyErr_SetString(PyExc_RuntimeError, "Could not fetch max_threads_dims");
%(fail)s;
}
while(threads_per_block[0]*threads_per_block[1]>max_threads_dim && threads_per_block[1]>1)threads_per_block[1]--;
while(threads_per_block[0]*threads_per_block[1]>max_threads_dim && threads_per_block[0]>1)threads_per_block[0]--;
//Make bigger block to have better memory access pattern and
//a higher core utilisation. for smaller patch size
while(c*d*(threads_per_block[2]+1) < 128 && threads_per_block[2]<64 &&
threads_per_block[2]<PyGpuArray_DIMS(%(z)s)[0]){
threads_per_block[2]++;
}
int nb_block;
if (PyGpuArray_DIMS(%(z)s)[0] %% threads_per_block[2] == 0)
nb_block = PyGpuArray_DIMS(%(z)s)[0] / threads_per_block[2];
else
nb_block = (PyGpuArray_DIMS(%(z)s)[0] / threads_per_block[2]) + 1;
size_t n_blocks[3] = {std::min(32*1024,nb_block), 1, 1};
GpuKernel *fptr;
if(threads_per_block[0]==d && threads_per_block[1]==c){
fptr = &k_multi_warp_less_%(name)s;
}else{
fptr = &k_multi_warp_%(name)s;
}
/*
printf("%%zu %%zu %%zu %%zu %%zu %%zu %%zu\\n",
max_threads_dim, threads_per_block[0], threads_per_block[1], threads_per_block[2],
n_blocks[0], n_blocks[1], n_blocks[2]);
*/
size_t stride_A0 = PyGpuArray_STRIDES(%(ten4)s)[0] / itemsize_ten4;
size_t stride_A1 = PyGpuArray_STRIDES(%(ten4)s)[1] / itemsize_ten4;
size_t stride_A2 = PyGpuArray_STRIDES(%(ten4)s)[2] / itemsize_ten4;
size_t stride_A3 = PyGpuArray_STRIDES(%(ten4)s)[3] / itemsize_ten4;
size_t stride_Z0 = PyGpuArray_STRIDES(%(z)s)[0] / itemsize_z;
size_t stride_Z1 = PyGpuArray_STRIDES(%(z)s)[1] / itemsize_z;
void *kernel_params[] = {(void *)&mode,
(void *)&nb_batch,
(void *)&nb_stack,
(void *)&height, (void *)&width,
(void *)&c, (void *)&d,
(void *)&step_x, (void *)&step_y,
(void *)&grid_c, (void *)&grid_d,
(void *)&stride_A0,
(void *)&stride_A1,
(void *)&stride_A2,
(void *)&stride_A3,
(void *)%(ten4)s->ga.data,
(void *)&%(ten4)s->ga.offset,
(void *)&stride_Z0,
(void *)&stride_Z1,
(void *)%(z)s->ga.data,
(void *)&%(z)s->ga.offset};
err = GpuKernel_call(fptr, 3, n_blocks, threads_per_block, 0, kernel_params);
%(err_check)s
} // END NESTED SCOPE
""" % dict(ten4=inp[0], neib_shape=inp[1], neib_step=inp[2], z=out[0],
dtype_neib_shape=node.inputs[1].dtype,
dtype_neib_step=node.inputs[2].dtype,
err_check=err_check,
name=name,
params=sub['params'],
fail=sub['fail'])
def perform(self, node, inp, out, params):
# Disable the perform method from the CPU version
Op.perform(self, node, inp, out, params)