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This repository has been archived by the owner on Aug 15, 2018. It is now read-only.
For some images, the object count is wrong after applying the watershed segmentation. The reason is not clear to me yet. It is related to the shape of the primary objects, however, since smoothing the input mask solves the problem. It could be related to the labeling of objects, which is different in Matlab and Python.
The text was updated successfully, but these errors were encountered:
That was due to differences in labelling of images between Matlab and Python modules.
The mahotas function uses a 4-neighbourhood labelling by default, while Matlab's bwlabel uses a 8-neighbourhood. Fixed with commits 0e8d0bd and 86f6e78.
For some images, the object count is wrong after applying the watershed segmentation. The reason is not clear to me yet. It is related to the shape of the primary objects, however, since smoothing the input mask solves the problem. It could be related to the labeling of objects, which is different in Matlab and Python.
The text was updated successfully, but these errors were encountered: