This is the user guide for running bioinformatics analysis on Tufts High Performance Computing clusters.
If you have any question, contact me (Yucheng Zhang).
tutorials/16s/00.overview tutorials/chipseq/chipseq tutorials/rnaseq/rnaseq tutorials/scrnaseq/scrnaseq
source/alphafold/alphafold source/angsd/angsd source/bcftools/bcftools source/bedops/bedops source/bedtools/bedtools source/biobakery_workflows/biobakery_workflows source/blast/blast source/bowtie2/bowtie2 source/busco/busco source/canu/canu source/cellranger/cellranger source/cellranger-atac/cellranger-atac source/cufflinks/cufflinks source/cutadapt/cutadapt source/diamond/diamond source/fasta3/fasta3 source/fastp/fastp source/fastqc/fastqc source/fastspar/fastspar source/filtlong/filtlong source/flye/flye source/gatk4/gatk4 source/hisat2/hisat2 source/hmmer/hmmer source/htseq/htseq source/impute2/impute2 source/kallisto/kallisto source/macs2/macs2 source/macs3/macs3 source/masurca/masurca source/medaka/medaka source/megahit/megahit source/miniasm/miniasm source/minipolish/minipolish source/orthofinder/orthofinder source/picard/picard source/plink/plink source/plink2/plink2 source/polypolish/polypolish source/qiime2/qiime2 source/raven-assembler/raven-assembler source/rmats2sashimiplot/rmats2sashimiplot source/salmon/salmon source/samtools/samtools source/signalp6/signalp6 source/spades/spades source/star/star source/subread/subread source/trim-galore/trim-galore source/trimmomatic/trimmomatic source/trinity/trinity source/trycycler/trycycler