Minipolish is a tool for Racon polishing of miniasm assemblies.
For more information, please check:
Docker hub: https://hub.docker.com/r/staphb/minipolish
Home page: https://github.com/rrwick/Minipolish
- 0.1.3
- minipolish
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run minipolish on our clusters:
#!/bin/bash #SBATCH -p PartitionName # batch, gpu, preempt, mpi or your group's own partition #SBATCH -t 1:00:00 #SBATCH -N 1 #SBATCH -n 1 #SBATCH -c 4 #SBATCH --mem=8G #SBATCH --job-name=minipolish #SBATCH --mail-type=FAIL,BEGIN,END #SBATCH --error=%x-%J-%u.err #SBATCH --output=%x-%J-%u.out module purge module load minipolish/XXXX ### you can run *module avail minipolish* to check all available versions minipolish -t 8 long_reads.fastq.gz assembly.gfa > polished.gfa