Raven-assembler is a de novo genome assembler for long uncorrected reads.
For more information, please check:
BioContainers: https://biocontainers.pro/tools/raven-assembler
Home page: https://github.com/lbcb-sci/raven
- 1.8.1
- raven
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run raven-assembler on our clusters:
#!/bin/bash #SBATCH -p PartitionName # batch, gpu, preempt, mpi or your group's own partition #SBATCH -t 1:00:00 #SBATCH -N 1 #SBATCH -n 1 #SBATCH -c 4 #SBATCH --mem=8G #SBATCH --job-name=raven-assembler #SBATCH --mail-type=FAIL,BEGIN,END #SBATCH --error=%x-%J-%u.err #SBATCH --output=%x-%J-%u.out module purge module load raven-assembler/XXXX ### you can run *module avail raven-assembler* to check all available versions