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Rmats2sashimiplot

Introduction ~~~~~~~~ Rmats2sashimiplot produces a sashimiplot visualization of rMATS output.

For more information, please check:
BioContainers: https://biocontainers.pro/tools/rmats2sashimiplot
Home page: https://github.com/Xinglab/rmats2sashimiplot

Versions

  • 2.0.4
  • 3.0.0

Commands ~~~~~~~ - rmats2sashimiplot

Example job ~~~~~ .. warning:: Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run rmats2sashimiplot on our clusters:

#!/bin/bash
#SBATCH -p PartitionName  # batch, gpu, preempt, mpi or your group's own partition
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH -c 4
#SBATCH --mem=8G
#SBATCH --job-name=rmats2sashimiplot
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module purge
module load rmats2sashimiplot/XXXX ### you can run *module avail rmats2sashimiplot* to check all available versions