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UBI Center analysis template

Template for UBI Center analyses, including Jupyter-Book and GitHub Action files.

Instructions:

  • Replace reponame with the name of the repo in environment.yml, jb/_config.yml, and the files in .github/workflows/*.
  • Add data generation .py script and data files to jb/data folder. Store files in .csv.gz format and load them as local files in analysis notebooks.
  • Add all necessary packages to environment.yml.
  • Use pull requests to make changes; the workflows will trigger and alert you of any errors.