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ADMUR version 1.0.3

Round 1: 2021-03-19 This is a new submission.

Test environments

  • local Windows 10, R 4.0.3
  • Travis CI
  • R-hub builder: Fedora Linux, R-devel, clang, gfortran
  • R-hub builder: Windows Server 2008 R2 SP1, R-devel, 32/64 bit
  • R-hub builder: Ubuntu Linux 16.04 LTS, R-release, GCC
  • win-builder (release)
  • win-builder (devel)

R CMD check results

  • There was 1 NOTE:
  • Package was archived on CRAN CRAN repository db overrides: X-CRAN-Comment: Archived on 2021-01-30 as check problems were not corrected in time.

Downstream dependencies

I have run R CMD check on downstream dependencies of ADMUR All packages passed with no ERRORs or WARNINGs and Status: OK

What changed

  • All calls to svg() replaced with png() following request from Prof Brian Ripley on 2021-01-16. Aplogies for the delay in fixing this.

ADMUR version 1.0.2

Round 1: 2021-01-26 This is a new submission.

Test environments

  • local Windows 10, R 4.0.3
  • Travis CI
  • R-hub builder: Fedora Linux, R-devel, clang, gfortran
  • R-hub builder: Windows Server 2008 R2 SP1, R-devel, 32/64 bit
  • R-hub builder: Ubuntu Linux 16.04 LTS, R-release, GCC
  • win-builder (release)
  • win-builder (devel)

R CMD check results

  • There were no ERRORs, no WARNINGs, no NOTES

Downstream dependencies

I have run R CMD check on downstream dependencies of ADMUR All packages passed with no ERRORs or WARNINGs and Status: OK

What changed

  • svg() now imported from grDevices in NAMESPACE and DESCRIPTION, following request from Prof Brian Ripley on 2021-01-16.
  • 14C datasets from taphonomic papers added (Surovell, Bluhm, Bryson etc).
  • Substantial update to guide, detailing taphonomy.
  • Taphonomy parameter incorporated into convertPars(), objectiveFunction(), proposalFunction(), mcmc().
  • New CPLparsToHinges() helper function purely to handle converting CPL parameters into hinges.

ADMUR version 1.0.1

Round 2: 2020-11-29 This is a resubmission.

In this version I have:

  • reduced tarball size from 7.8 MB to 4.1 MB Many thanks to Uwe Ligges for helpful advice.

Round 1: 2020-11-28 This is a new submission.

Please accept my apologies for the short period since last submission (23 days). Much development has been done in this time. I anticipate a much longer period before next submission.

Test environments

  • local Windows 10, R 4.0.3
  • Travis CI
  • R-hub builder: Windows Server 2008 R2 SP1, R-devel, 32/64 bit
  • R-hub builder: Fedora Linux, R-devel, clang, gfortran
  • R-hub builder: Ubuntu Linux 16.04 LTS, R-release, GCC
  • win-builder (release)
  • win-builder (devel)

R CMD check results

Downstream dependencies

I have also run R CMD check on downstream dependencies of ADMUR All packages passed with no ERRORs or WARNINGs and Status: OK

Further comments

  • The possibly invalid URL is actually correct, the paper is in press and will go live on 2020-11-30

What changed

  • Added a logistic model.
  • Added three toy datasets.
  • New section in guide, exploring further models.
  • Substantial improvement in the area breaking algorithm, total rebuild of convertParsCPL().
  • Added a Cauchy model.
  • Added a sigmoidal model.
  • Added a Gaussian model.
  • Added checkData()
  • Cleaner mathematical formulae in manuals, using mathjaxr

ADMUR version 1.0.0

Round 2: 20-11-11 This is a resubmission.

In this version I have:

  • changed all instances of \dontrun{} to \donttest{}, as these take > 5 secs.
  • removed all changes to options(warn). Was previously used to suppress repetitive warnings if summedCalibrator() was run in a loop. I have instead added 'checks' as an argument to this function, giving user choice to suppress.
  • removed all changes to par() within functions.
  • ensured par() changes in vignettes are reset to user's par(). Many thanks to Gregor Seyer for hugely helpful comments.

R CMD check results

There were no ERRORs or WARNINGs. There was 1 NOTE: checking CRAN incoming feasibility ... NOTE Maintainer: 'Adrian Timpson a.timpson@ucl.ac.uk'

Round 1: 2020-11-06 This is a new submission.

Test environments

  • local Windows 10, R 4.0.2
  • Travis CI
  • win-builder (release)

R CMD check results

There were no ERRORs or WARNINGs. There was 1 NOTE: checking CRAN incoming feasibility ... NOTE Maintainer: 'Adrian Timpson a.timpson@ucl.ac.uk' New submission

Downstream dependencies

I have also run R CMD check on downstream dependencies of ADMUR All packages passed with no ERRORs or WARNINGs and Status: OK

Further comments

  • The build checks identify the following correct URL: https://doi.org/10.1098/rstb.2019.0723 as 'possibly invalid', since this paper is due to be published on 2020-11-30
  • The build checks identify: Possibly mis-spelled words in DESCRIPTION: SPD (11:303, 11:322) This intended initialisation is previously fully specified (Summed Probability Distribution).