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---
layout: page
---
<!-- ****** -->
<!-- Explain - the introductory/overview box -->
<!-- ****** -->
<section class="page-section">
<div class="container">
<div class="product-item">
<div class="product-item-title d-flex">
<div class="bg-faded p-5 d-flex mr-auto rounded">
<!-- change to ml-auto to push right -->
<div class="section-heading mb-0">
<h2 class="mb-0">
<span class="section-heading-upper">A: Analyze and Interpret the Data</span>
<span class="section-heading-lower">Analyze and Interpret the Data</span>
</h2>
<div class="mt-2" style="text-transform: none">
<p>In this step you will look at each figure in the article and analyze it to determine whether it supports the hypothesis.</p>
<!-- Steps, Part 1 -->
<div class="card mb-3">
<!-- Step 1.1 -->
<div class="row no-gutters">
<div class="col-md-4">
<!-- Image -->
<a data-toggle="modal" data-target="#step-1-1-info" href="#"><img src="{{ '/img/a_analyze_the_figures.png' | absolute_url }}" class="card-img" alt="Abstract representation of CREATES analysis template."></a>
</div>
<div class="col-md-8">
<div class="card-body">
<h3>Analyze the Figures</h3>
<p><em>“For me, this step was very helpful because when I read papers before, I’d never actually read the figures. Reading the figures gave me a much better understanding of the paper.” - a CREATES student</em></p>
<ol>
<li><strong>Fill out the CREATES analysis template: </strong>Choose an analysis template below based on the types of experiments you identified in the previous step and fill it out for your figure. The templates are annotated with tips and examples to help guide your answers!</li>
<ul>
<li><a href="https://docs.google.com/document/d/1F4ami2ZzMX8CaoUFOHmJzmZAz3Be6bCHW0BtrdMr-4o/copy?copyComments=true" target="_blank">Descriptive Study</a></li>
<li><a href="https://docs.google.com/document/d/1du1Vx7Nuf7TKATtAMsOaMk-AnlYb9erx98LXHtKk22c/copy?copyComments=true" target="_blank">Experimental Test</a></li>
<li><a href="https://docs.google.com/document/d/12kSNBddWaWzwEXU9ICeZwe3kXBm-kR4gnXRpGkKCXUs/copy?copyComments=true" target="_blank">Free Response</a></li>
</ul>
<li><strong>Repeat for each figure: </strong>For each figure in the paper, make a new copy of the analysis template and fill it out. You can also write your own analysis on a separate sheet of paper instead of using the template.</li>
</ol>
<!-- <p class="card-text text-right"><a data-toggle="modal" data-target="#step-1-2-info" href="#"><small class="text-muted">See an example ></small></a></p>-->
</div>
</div>
</div>
</div><!-- closes out the card -->
<!-- *** closing out this section *** -->
</div>
</div>
</div>
</div>
</div>
</div>
</section>
<!-- *** now this section is closed *** -->
<!-- ****** -->
<!-- Demonstrate provide at least two annotated examples - can be slideshow, h5p, ... -->
<!-- ****** -->
<section class="page-section">
<div class="container">
<div class="product-item">
<div class="product-item-title d-flex">
<div class="bg-faded p-5 d-flex mr-auto rounded">
<!-- change to ml-auto to push right -->
<h2 class="section-heading mb-0">
<span class="section-heading-upper">What makes a successful analysis?</span>
<span class="section-heading-lower">Real student analyses</span>
</h2>
</div>
</div>
<!-- tab card -->
<div class="row justify-content-center mt-5 mb-5">
<div class="col-12 col-sm-12 col-md-11 col-lg-10">
<div class="card">
<div class="card-body">
<!-- if you include something here it will be at the top of all tabs -->
<div class="tab-content mt-3 text-center">
<h3 class="text-center">Example 1: <a href="https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-016-0225-7?sap-outbound-id=59B4908C4DD66E2B3E14234738AF54E708A355BF " target="_blank">Microbial Transfer Therapy</a> (Experimental Study)</h3>
<div class="intro-button mx-auto mb-4">
<a class="btn btn-primary" href="https://docs.google.com/document/d/19YyKRmbtOacKbPctkA9KsyFhhQQpqyCusqezHoo_uGE/copy?copyComments=true">Link to Google Doc</a>
</div>
<h3 class="text-center">Example 2: <a href="https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1004181" target="_blank">Temperate Phages</a> (Free Response)</h3>
<div class="intro-button mx-auto mb-4">
<a class="btn btn-primary" href="https://docs.google.com/document/d/1kyd47zLwnNnilSAwjtvhFCpzgvA0-aEXMcCCuPJqQjU/copy?copyComments=true">Link to Google Doc</a>
</div>
<div class="tab-content mt-3 text-center">
<h3 class="text-center">More Examples</h3>
<p>See below for some analysis examples created by two different students for the same scientific article (linked for your reference).</p>
<!--Moon et al. 2020-->
<h4 class="text-center mb-4"><a href="https://pubmed.ncbi.nlm.nih.gov/32482165/" target="_blank">Moon et al. 2020</a></h4>
<div class="row align-items-center">
<div class="col-sm mb-5">
<a href="{{ '/img/examples/Moon2020-A-1.pdf' | absolute_url }}"><img src="{{ '/img/examples/thumbnails/Moon2020-A-1-tn.jpeg' | absolute_url }}" width="300px" alt="Analysis example"></a>
</div>
<div class="col-sm mb-5">
<a href="{{ '/img/examples/Moon2020-A-2.pdf' | absolute_url }}"><img src="{{ '/img/examples/thumbnails/Moon2020-A-2-tn.jpeg' | absolute_url }}" width="300px" alt="Analysis example"></a>
</div>
</div>
<!--Tsao et al. 2018-->
<h4 class="text-center mb-4"><a href="https://pubmed.ncbi.nlm.nih.gov/30150232/" target="_blank">Tsao et al. 2018</a></h4>
<div class="row align-items-center">
<div class="col-sm mb-5 align-middle">
<a href="{{ '/img/examples/Tsao2018-A-1.pdf' | absolute_url }}"><img src="{{ '/img/examples/thumbnails/Tsao2018-A-1-tn.jpeg' | absolute_url }}" width="300px" alt="Analysis example"></a>
</div>
<div class="col-sm mb-5 align-middle">
<a href="{{ '/img/examples/Tsao2018-A-2.pdf' | absolute_url }}"><img src="{{ '/img/examples/thumbnails/Tsao2018-A-2-tn.jpeg' | absolute_url }}" width="300px" alt="Analysis example"></a>
</div>
</div>
<!--Wang et al. 2019-->
<h4 class="text-center mb-4"><a href="https://pubmed.ncbi.nlm.nih.gov/31792408/" target="_blank">Wang et al. 2019</a></h4>
<div class="row align-items-center">
<div class="col-sm mb-5 align-middle">
<a href="{{ '/img/examples/Wang2019-A-1.pdf' | absolute_url }}"><img src="{{ '/img/examples/thumbnails/Wang2019-A-1-tn.jpeg' | absolute_url }}" width="300px" alt="Analysis example"></a>
</div>
<div class="col-sm mb-5 align-middle">
<a href="{{ '/img/examples/Wang2019-A-2.pdf' | absolute_url }}"><img src="{{ '/img/examples/thumbnails/Wang2019-A-2-tn.jpeg' | absolute_url }}" width="300px" alt="Analysis example"></a>
</div>
</div>
<!--Wright et al. 2019-->
<h4 class="text-center mb-4"><a href="https://pubmed.ncbi.nlm.nih.gov/31551330/" target="_blank">Wright et al. 2019</a></h4>
<div class="row align-items-center">
<div class="col-sm mb-5 align-middle">
<a href="{{ '/img/examples/Wright2019-A-1.pdf' | absolute_url }}"><img src="{{ '/img/examples/thumbnails/Wright2019-A-1-tn.jpeg' | absolute_url }}" width="300px" alt="Analysis example"></a>
</div>
<div class="col-sm mb-5 align-middle">
<a href="{{ '/img/examples/Wright2019-A-2.pdf' | absolute_url }}"><img src="{{ '/img/examples/thumbnails/Wright2019-A-2-tn.jpeg' | absolute_url }}" width="300px" alt="Analysis example"></a>
</div>
</div>
<!--Yuan et al. 2019-->
<h4 class="text-center mb-4"><a href="https://pubmed.ncbi.nlm.nih.gov/31551330/" target="_blank">Yuan et al. 2019</a></h4>
<div class="row align-items-center">
<div class="col-sm mb-5 align-middle">
<a href="{{ '/img/examples/Yuan2019-A-1.pdf' | absolute_url }}"><img src="{{ '/img/examples/thumbnails/Yuan2019-A-1-tn.jpeg' | absolute_url }}" width="300px" alt="Analysis example"></a>
</div>
<div class="col-sm mb-5 align-middle">
<a href="{{ '/img/examples/Yuan2019-A-2.pdf' | absolute_url }}"><img src="{{ '/img/examples/thumbnails/Yuan2019-A-2-tn.jpeg' | absolute_url }}" width="300px" alt="Analysis example"></a>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<!-- /tab card -->
<!--
<div class="product-item-description d-flex mr-auto">
<div class="bg-faded p-5 rounded">
<p class="mb-0">These examples show a few different successful approaches to analyzing the data.</p>
<p>Take a look at the examples and click on the "+" icons to learn why each one was successful.</p>
</div>
</div>
</div>
</div>
</section>
-->
<!-- ****** -->
<!-- Guide & Enable - the introductory/overview box -->
<!-- ****** -->
<section class="page-section">
<div class="container">
<div class="product-item">
<div class="product-item-title d-flex">
<div class="bg-faded p-5 d-flex mr-auto rounded">
<!-- change to ml-auto to push right -->
<div class="section-heading mb-0">
<h2 class="mb-0">
<!--<span class="section-heading-upper">Guide & Enable</span>-->
<span class="section-heading-lower">Give it a try!</span>
</h2>
<div class="mt-2" style="text-transform: none">
<!-- todo:: find better css for quotes - ideally with a photo of person -->
<h3>Tips & Strategies</h3>
<ul>
<li>It may be helpful to refer to your annotated figures from <a href="{{ 'r' | absolute_url }}">R</a>.</li>
<li>You can be flexible when carrying out your analysis. The templates are especially useful for figures with panels, but may not be helpful for other types of figures. Choose a template that works for your study, or create your own analysis!</li>
</ul>
<h3>Ready?</h3>
<p>Now you are ready to analyze the data from the paper! When you finish, use this checklist to double-check your work:</p>
<!-- todo:: is there a way to do this w/o it being an input form? -->
<div class="input-group mb-3">
<div class="input-group-prepend">
<div class="input-group-text">
<input type="checkbox" aria-label="Checkbox for following text input"> </div><span class="bg-white w-auto border px-3 rounded-right">Identify which template to use for each experiment</span>
</div>
</div>
<div class="input-group mb-3">
<div class="input-group-prepend">
<div class="input-group-text">
<input type="checkbox" aria-label="Checkbox for following text input"> </div><span class="bg-white w-auto border px-3 rounded-right">Fill out the CREATES Analysis Template for each experiment</span>
</div>
</div>
</div>
</div>
</div>
</div>
<!-- an optional image/overview can be included here -->
<!-- an image that combines expert learner/teacher quote with visual illustration of tip could be powerful -->
<!--
<img class="product-item-img mx-auto d-flex rounded img-fluid mb-3 mb-lg-0" src="{{ 'img/placeholder.png' | absolute_url }}" alt="A placeholder image.">
-->
<!-- an optional text box to include below the image -->
<!--
<div class="product-item-description d-flex mr-auto">
<div class="bg-faded p-5 rounded">
<div class="mb-0">
<p>This is an optional box of text that you can include below the image if you want to.</p>
<p>Note that without the image, this will overlap with the text box above.</p>
</div>
</div>
</div>
-->
</div>
</div>
</section>
<!--Navigation at bottom of page-->
<section>
<nav aria-label="Page navigation example">
<ul class="pagination justify-content-center">
<li class="page-item">
<a class="page-link" href="{{ 'e/' | absolute_url }}" aria-label="Previous">
<span aria-hidden="true">« E</span>
<span class="sr-only">Previous</span>
</a>
</li>
<li class="page-item">
<a class="page-link" href="{{ 'te/' | absolute_url }}" aria-label="Next">
<span aria-hidden="true">TE »</span>
<span class="sr-only">Next</span>
</a>
</li>
</ul>
</nav>
</section>
<!-- ********* -->
<!-- modals - these pop up to provide more info about each step -->
<!-- ********* -->
<!-- Modal 1.1 - Pop up with more information -->
<div class="modal fade" id="step-1-1-info" tabindex="-1" role="dialog" aria-labelledby="More information on step 1.1" aria-hidden="true">
<div class="modal-dialog" role="document">
<div class="modal-content">
<div class="modal-header">
<!--<h5 class="modal-title" id="exampleModalLabel">More information on step 1.1</h5>-->
<button type="button" class="close" data-dismiss="modal" aria-label="Close"> <span aria-hidden="true">×</span> </button>
</div>
<div class="modal-body"><img src="{{ '/img/a_analyze_the_figures.png' | absolute_url }}" class="img-thumbnail img-fluid" alt="Abstract representation of CREATES analysis template.">
<!--<p>More info</p>-->
</div>
<div class="modal-footer">
<button type="button" class="btn btn-secondary" data-dismiss="modal">Close</button>
</div>
</div>
</div>
</div>