UPPMAX packages

Packages included in the python/3.9.5 module

Jupyter Notebook
matplotlib
networkx
numpy
Pandas
Graphviz/0.16
scipy

Packages that can be loaded with 'module load'

module load bioinfo-tools biopython
- biopython
module load python_ML_packages
- sklearn/scikit-learn
- TensorFlow
- torch
- mpi
- mpi4py
module load bwa
module load Graphviz/2.40.1
module load HiChipper
module load Homer
module load pysam

Packages not centrally installed at the moment

adjustText
DeepLabCut
ete3
Google Colab
KiwiDist
rpack
Rdkit
plink
puma
Pygraphviz/1.9
pyspark
ScanPy
venndiagram (venn/matplotlib-venn)
vtk/vtkmodules