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Slow-patterns

Slow-patterns

 
 

Bioghost-server.md

Bioghost-server.md

 
 

HPC-in-R.md

HPC-in-R.md

 
 

High-Performance-Computing.md

High-Performance-Computing.md

 
 

Home.md

Home.md

 
 

README.md

README.md

 
 

Running-R-on-HPC.md

Running-R-on-HPC.md

 
 

Running-RStudio-on-the-HPC.md

Running-RStudio-on-the-HPC.md

 
 

Setting-up-optional-OpenMP-support.md

Setting-up-optional-OpenMP-support.md

 
 

Structures-and-pointers-with-Rcpp.md

Structures-and-pointers-with-Rcpp.md

 
 

Virtual-Hosts.md

Virtual-Hosts.md

 
 

Wishlist.md

Wishlist.md

 
 

_Sidebar.md

_Sidebar.md

 
 

coding-standards-george.md

coding-standards-george.md

 
 

coding-standards.md

coding-standards.md

 
 

install-rmpi-on-hpc.md

install-rmpi-on-hpc.md

 
 

README.md

Welcome to the Software Development Wiki!

This wiki seeks to document the Software Development practices that we consider as standards. To contribute, please respect the following guidelines:

  1. Keep it simple: The home page (this page) is for general guidelines. More elaborate recommendations or examples should be provided in the specific page for each topic.

  2. Unless previously agreed, don't overwrite content. If in doubt, please contact either Paul Marjoram or Nick Mancuso.

The wiki is organized in the following sections:

Coding Standards

  1. Coding Standards
  2. Software Thinking
  3. Development Workflow
  4. Dealing with slow Rcode
  5. Misc

Bioghost Server

HPC in R

USC's HPCC

Software Licensing

We suggest the following (MIT) license language for our software:

Copyright

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.