The GC namelist for cb6r5_ae7_aq has the following gas phase species.
| Model Species | Definition | Molecular Weight | Explicit or Lumped |
|---|---|---|---|
| AACD | acetic acid | 60 | E |
| ACET | acetone | 58.1 | E |
| ACRO_PRIMARY | acrolein from emissions only | 56.1 | E |
| ACROLEIN | acrolein | 56.1 | E |
| ALD2 | acetaldehyde | 44 | E |
| ALD2_PRIMARY | acetaldehyde from emissions only | 44 | E |
| ALDX | aldehydes with 3 or more carbons | 58.1 | L |
| APIN | alpha pinene | 136.2 | E |
| BENZENE | benzene | 78.1 | E |
| BENZRO2 | counter species for aerosol from benzene+OH | 127 | L |
| BUTADIENE13 | 1,3-butadiene | 54 | E |
| BZO2 | peroxy radical from benzene reactions with OH | 159.1 | L |
| C2O3 | acetylperoxy radical | 75 | E |
| CAT1 | methyl catechols | 124.1 | L |
| CL | atomic chlorine | 35.5 | E |
| CL2 | molecular chlorine | 71 | E |
| CLNO2 | nitryl chloride | 81.5 | E |
| CLNO3 | chlorine nitrate | 97.5 | E |
| CLO | chlorine monoxide | 51.5 | E |
| CO | carbon monoxide | 28 | E |
| CRES | cresol and higher molecular weight phenols | 108.1 | L |
| CRO | alkoxy radical from cresol | 107.1 | L |
| CRON | nitro-cresols | 153.1 | L |
| CXO3 | acetylperoxy radicals with 3 or more carbons | 89 | L |
| DMS | dimethylsulfide | 62.0 | E |
| ECH4 | methane | 16 | E |
| EPOX | isoprene epoxydiol | 118.1 | L |
| EPX2 | peroxy radical from EPOX+OH reaction | 149.1 | L |
| ETH | ethene | 28 | E |
| ETHA | ethane | 30.1 | E |
| ETHY | ethyne (acetylene) | 26 | E |
| ETOH | ethanol | 46.1 | E |
| FACD | formic acid | 46 | E |
| FMCL | formylchloride | 64.5 | E |
| FORM | formaldehyde | 30 | E |
| FORM_PRIMARY | formaldehyde from emissions only | 30 | E |
| GLY | glyoxal | 58 | E |
| GLYD | glycoaldehyde (hydroxyacetaldehyde) | 60 | E |
| H2NO3PIJ | tracer producing HNO3 or ClNO2 from N2O5 in fine mode aerosols | 64 | E |
| H2NO3PK | tracer producing HNO3 or ClNO2 from N2O5 in coarse mode aerosols | 64 | E |
| H2O2 | hydrogen peroxide | 34 | E |
| HCL | hydrochloric acid | 36.5 | E |
| HCO3 | radical from HO2 reactions with formaldehyde | 63 | E |
| HG | elemental mercury | 200.6 | E |
| HGIIAER | precursor of aerosol divalent mercury | 200.6 | E |
| HGIIGAS | divalent mercury | 271.5 | E |
| HNO3 | nitric acid | 63 | E |
| HO2 | hydroperoxy radical | 33 | E |
| HOCL | hypochlorous acid | 52.5 | E |
| HONO | nitrous acid | 47 | E |
| HPLD | hydroperoxyaldehyde from ISO2 isomerization | 116.1 | L |
| INTR | nitrate from isoprene | 147.1 | L |
| IOLE | internal alkene bond | 56.1 | L |
| ISO2 | isoprene peroxy radical | 117.1 | L |
| ISOP | isoprene | 68.1 | E |
| ISOPRXN | counter species for aerosol from isoprene, volatility pathways | 68.1 | L |
| ISPD | isoprene reaction products (methacrolein, methylvinyl ketone, others) | 70.1 | L |
| ISPX | hydroperoxide from ISO2 reaction with HO2 | 118.1 | L |
| KET | carbon-ketone bond | 72.1 | L |
| MEO2 | methylperoxy radical | 47 | E |
| MEOH | methanol | 32 | E |
| MEPX | methylhydroperoxide | 48 | E |
| MGLY | methyl glyoxal | 72 | E |
| MMTNO3 | organic nitrates from monoterpene oxidation (Should not to be included for tracking nitrogen) | 231.0 | L |
| MSA | methane sulfonic acid | 96.0 | E |
| N2O5 | dinitrogen pentoxide | 108 | E |
| NAPH | naphthalene | 128.2 | E |
| NO | nitric oxide | 30 | E |
| NO2 | nitrogen dioxide | 46 | E |
| NO3 | nitrate radical | 62 | E |
| NTR1 | monofunctional organic nitrates | 119.1 | L |
| NTR2 | multifunctional organic nitrates | 135.1 | L |
| O | ground-state oxygen atoms, O(3P) | 16 | E |
| O1D | electronically excited oxygen atoms, O(1D) | 16 | E |
| O3 | ozone | 48 | E |
| OH | hydroxyl radical | 17 | E |
| OLE | terminal alkene bond | 42.1 | L |
| OPAN | peroxyacylnitrate from OPO3 | 161 | L |
| OPEN | aromatic ring opening product (an alkene and aldehyde) | 84 | L |
| OPO3 | peroxyacyl radical from OPEN | 115 | L |
| PACD | peroxycarboxylic acids | 76 | L |
| PAHRO2 | counter species for aerosol from NAPH+OH | 187.2 | L |
| PAN | peroxyacylnitrate | 121 | E |
| PANX | peroxyacylnitrates with 3 or more carbons | 135 | L |
| PAR | carbon-carbon single bond | 14.0 | L |
| PCSOARXN | counter species for potential aerosol from combustion (from PCVOC reactions) | 170 | L |
| PCVOC | tracer for potential combustion SOA VOCs | 170 | L |
| PNA | peroxynitric acid | 79 | E |
| PRPA | propane | 44.1 | E |
| RO2 | total peroxy radical concentration | 87.1 | L |
| ROOH | methylhydroperoxide | 90.1 | E |
| ROR | secondary alkoxy radical | 71.1 | L |
| SESQ | sesquiterpenes | 204 | L |
| SESQRXN | counter species for aerosol from sesquiterpenes | 204 | L |
| SO2 | sulfur dioxide | 64 | E |
| SOAALK | tracer for alkanes that can form secondary organic aerosol | 112 | L |
| SULF | sulfuric acid (gaseous) | 98 | E |
| SULRXN | sulfate aerosol precursor | 98 | E |
| SVAVB1 | low volatility organic gas from oxidation of anthropogenic VOCs | 179.0 | L |
| SVAVB2 | semivolatile organic gas from oxidation of anthropogenic VOCs | 169.0 | L |
| SVAVB3 | semivolatile organic gas from oxidation of anthropogenic VOCs | 158.0 | L |
| SVAVB4 | semivolatile organic gas from oxidation of anthropogenic VOCs | 198.0 | L |
| TERP | monoterpenes | 136.2 | L |
| TERPNRO2 | counter species for aerosol from TERP + NO3 | 197.0 | L |
| TO2 | toluene peroxy radical | 173.1 | L |
| TOL | toluene and other monoalkyl aromatics | 92.1 | L |
| TOLRO2 | counter species for aerosol from TOL+OH | 141 | L |
| TOLU | toluene | 92 | E |
| TRPRXN | counter species for aerosol precursor from monoterpenes | 136.2 | L |
| VIVPO1 | evaporated primary organic aerosol, intermed-volatility | 266 | L |
| VLVOO1 | evaporated secondary organic aerosol, low-volatility, cat 1 | 136 | L |
| VLVOO2 | evaporated secondary organic aerosol, low-volatility, cat 2 | 136 | L |
| VLVPO1 | evaporated primary organic aerosol, low-volatility | 218 | L |
| VSVOO1 | evaporated secondary organic aerosol, semi-volatile, cat 1 | 135 | L |
| VSVOO2 | evaporated secondary organic aerosol, semi-volatile, cat 2 | 135 | L |
| VSVOO3 | evaporated secondary organic aerosol, semi-volatile, cat 3 | 134 | L |
| VSVPO1 | evaporated primary organic aerosol, semi-volatile, cat 1 | 230 | L |
| VSVPO2 | evaporated primary organic aerosol, semi-volatile, cat 2 | 241 | L |
| VSVPO3 | evaporated primary organic aerosol, semi-volatile, cat 3 | 253 | L |
| XLO2 | peroxy radical from XYLMN+OH reaction | 187.1 | L |
| XO2 | NO oxidation to NO2 via peroxy radical | 87.1 | L |
| XO2H | NO oxidation to NO2 with HO2 production, from alkoxy radicals | 87.1 | L |
| XO2N | nitrate production from NO reaction with peroxy radical | 87.1 | L |
| XOPN | product of aromatic ring-opening reaction | 98.1 | L |
| XPAR | organic nitrate production from PAR | 117.1 | L |
| XPRP | organic nitrate production from PRPA | 89.1 | L |
| XYLMN | xylene and other polyalkyl aromatics except naphthalene | 106.2 | L |
| XYLRO2 | counter species for aerosol from XYLMN+OH | 155 | L |
The AE namelist for cb6r5_ae7_aq has the following aerosol species.
| Model Species | Definition | Molecular Weight | Explicit or Lumped |
|---|---|---|---|
| AAL | Aluminum | 27 | E |
| AAVB1 | low volatility organic particulate matter from oxidation of anthropogenic VOCs | 198.0 | L |
| AAVB2 | semivolailte organic particulate matter from oxidation of anthropogenic VOCs | 179.0 | L |
| AAVB3 | semivolailte organic particulate matter from oxidation of anthropogenic VOCs | 169.0 | L |
| AAVB4 | semivolailte organic particulate matter from oxidation of anthropogenic VOCs | 158.0 | L |
| ACA | Calcium | 40.1 | E |
| ACL | Chloride | 35.5 | E |
| ACORS | Anthropogenic Coarse-mode particle mass | 100.0 | L |
| AEC | Elemental Carbon | 12 | E |
| AFE | Iron | 55.8 | E |
| AGLY | Glyoxal and Methylglyoxal SOA in aqueous aerosol material | 66.4 | L |
| AH2O | Water | 18 | E |
| AH3OP | Hydronium Ion | 19 | E |
| AISO1 | Semivolatile SOA Product from Isoprene | 132.0 | L |
| AISO2 | High-Volatility SOA Product from Isoprene | 133.0 | L |
| AISO3 | Acid-catalyzed Isoprene Epoxydiol SOA | 168.2 | L |
| AIVPO1 | Intermediate Volatility Primary Organic Compounds | 266 | L |
| AK | Potassium | 39.1 | E |
| ALVOO1 | Low Volatility Oxidized Combustion Organic Compounds | 136 | L |
| ALVOO2 | Low Volatility Oxidized Combustion Organic Compounds | 136 | L |
| ALVPO1 | Low Volatility Primary Organic Compounds | 218 | L |
| AMG | Magnesium | 24.3 | E |
| AMN | Manganese | 54.9 | E |
| AMT1 | low volatility particulate matter from monoterpene photoxidation, C*=0.01 ug/m3 | 200.0 | L |
| AMT2 | low volatility particulate matter from monoterpene photoxidation, C*=0.1 ug/m3 | 300.0 | L |
| AMT3 | semivolailte particulate matter from monoterpene photoxidation, C*=1 ug/m3 | 186.0 | L |
| AMT4 | semivolatile particulate matter from monoterpene photoxidation, C*=10 ug/m3 | 184.0 | L |
| AMT5 | semivolatile particulate matter from monoterpene photoxidation, C*=100 ug/m3 | 170.0 | L |
| AMT6 | semivolatile particulate matter from monoterpene photoxidation, C*=1000 ug/m3 | 168.0 | L |
| AMTNO3J | semivolatile organic nitrates from monoterpene oxidation (Should not to be included for tracking nitrogen) | 231.0 | L |
| AMTHYDJ | organic pseudo-hydrolysis accretion product from monoterpene organic nitrates (AMTNO3J) | 168.0 | L |
| ANA | Sodium | 23 | E |
| ANH4 | Ammonium | 18 | E |
| ANO3 | Nitrate | 62 | E |
| AOLGA | Oligomer products of anthropogenic SOA compounds | 206.0 | L |
| AOLGB | Oligomer products of biogenic SOA compounds | 248.0 | L |
| AORGC | Glyoxal and methylglyoxal SOA produced in cloud water | 177.0 | L |
| AORGH2O | Water associated with organic species of particulate matter | 18.0 | E |
| AOTHR | Other Particulate Mass | 200 | L |
| APCSO | Potential Combustion SOA | 170 | L |
| APNCOM | Non-Carbon Organic Matter associated with APOC | 220.0 | L |
| APOC | Primary Organic Carbon | 220.0 | L |
| ASEACAT | Sea spray cations | 23.75 | L |
| ASI | Silicon | 28.1 | E |
| ASO4 | Sulfate | 96 | E |
| ASOIL | Lumped crustal species | 100.0 | L |
| ASQT | Semivolatile SOA Product from Sesquiterpenes | 273.0 | L |
| ASVOO1 | Semivolatile Oxidized Combustion Organic Compounds | 135 | L |
| ASVOO2 | Semivolatile Oxidized Combustion Organic Compounds | 135 | L |
| ASVOO3 | Semivolatile Oxidized Combustion Organic Compounds | 134 | L |
| ASVPO1 | Semivolatile Primary Organic Compounds | 230 | L |
| ASVPO2 | Semivolatile Primary Organic Compounds | 241 | L |
| ASVPO3 | Semivolatile Primary Organic Compounds | 253 | L |
| ATI | Titanium | 47.9 | E |
| NUMACC | Accum. Mode Number Conc | NA | NA |
| NUMAIT | Aitken Mode Number Conc | NA | NA |
| NUMCOR | Coarse Mode Number Conc | NA | NA |
| SRFACC | Accum. Mode Surface Area Conc | NA | NA |
| SRFAIT | Aitken Mode Surface Area Conc | NA | NA |
| SRFCOR | Coarse Mode Surface Area Conc | NA | NA |
Note that for each aerosol mass species, a letter will be appended to the names below in order to designate the size, or mode, of the aerosol being represented: I = Aitken mode, J = Accumulation mode, K = Coarse mode.
The NR namelist for cb6r5_ae7_aq has the following gas phase species.
| Model Species | Definition | Molecular Weight | Explicit or Lumped |
|---|---|---|---|
| LVPCSOG | surrogate SOA precursor gas for combustion/anthropogenic sources | 170.0 | L |
| NH3 | ammonia | 17.0 | E |
| SVMT1 | low volatility gas from monoterpene photoxidation | 300.0 | L |
| SVMT2 | low volatility gas from monoterpene photoxidation | 200.0 | L |
| SVMT3 | semivolatile gas from monoterpene photoxidation | 186.0 | L |
| SVMT4 | semivolatile gas from monoterpene photoxidation | 184.0 | L |
| SVMT5 | semivolatile gas from monoterpene photoxidation | 170.0 | L |
| SVMT6 | semivolatile gas from monoterpene photoxidation | 168.0 | L |
| SVISO1 | semivolatile gas of secondary aerosol material from isoprene | 132.0 | L |
| SVISO2 | semivolatile gas of secondary aerosol material from isoprene | 133.0 | L |
| SVSQT | semivolatile gas of secondary aerosol material from sesquiterpenes | 273.0 | L |