3D_Scalar plot (xyt) gives errors plotting 3D variable with no time dimensions. #854
Comments
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Cameron, -- Tom From: cameronsmith1 <notifications@github.commailto:notifications@github.com> I wanted to plot a variable with 3 spatial dimensions by animating over the 3D dimension. Hence, I tried to do a 3D_Scalar plot using xyt. UVCDAT didn't like the fact that there wasn't a time dimension. Perhaps not surprising, but it just dumped a bunch of output to the console without giving a helpful message within the GUI. I am using UVCDAT 2.0.0 on Rhea. The console errors were: Error Reading Variable No axis matching order spec t Traceback (most recent call last): — |
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Hi Tom, Clarification of the option and an improved error message is all that is needed for this ticket. For the other ticket, I tried to find a place to upload a screenshot to the github ticket, but couldn't find a way to do it. You are welcome to a data file. What is the best way to get it to you? The raw netCDF file is ~100 Mbytes (I can probably cut it down to a few Mb if needed). The file is currently at the DOE OLCF facility. Best wishes, From: Thomas Maxwell [mailto:notifications@github.com] Cameron, -- Tom From: cameronsmith1 <notifications@github.commailto:notifications@github.com> I wanted to plot a variable with 3 spatial dimensions by animating over the 3D dimension. Hence, I tried to do a 3D_Scalar plot using xyt. UVCDAT didn't like the fact that there wasn't a time dimension. Perhaps not surprising, but it just dumped a bunch of output to the console without giving a helpful message within the GUI. I am using UVCDAT 2.0.0 on Rhea. The console errors were: Error Reading Variable No axis matching order spec t Traceback (most recent call last): — — |
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Philip, Thanks, From: cameronsmith1 <notifications@github.commailto:notifications@github.com> Hi Tom, Clarification of the option and an improved error message is all that is needed for this ticket. For the other ticket, I tried to find a place to upload a screenshot to the github ticket, but couldn't find a way to do it. You are welcome to a data file. What is the best way to get it to you? The raw netCDF file is ~100 Mbytes (I can probably cut it down to a few Mb if needed). The file is currently at the DOE OLCF facility. Best wishes, Philip From: Thomas Maxwell [mailto:notifications@github.com] Cameron, -- Tom From: cameronsmith1 <notifications@github.commailto:notifications@github.commailto:notifications@github.com> I wanted to plot a variable with 3 spatial dimensions by animating over the 3D dimension. Hence, I tried to do a 3D_Scalar plot using xyt. UVCDAT didn't like the fact that there wasn't a time dimension. Perhaps not surprising, but it just dumped a bunch of output to the console without giving a helpful message within the GUI. I am using UVCDAT 2.0.0 on Rhea. The console errors were: Error Reading Variable No axis matching order spec t Traceback (most recent call last): � � � |
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Philip, Thanks, From: , "Maxwell, Thomas P. (GSFC-606.2)[SCIENCE APPLICATIONS INTL CORP]" <thomas.maxwell@nasa.govmailto:thomas.maxwell@nasa.gov> Philip, Thanks, From: cameronsmith1 <notifications@github.commailto:notifications@github.com> Hi Tom, Clarification of the option and an improved error message is all that is needed for this ticket. For the other ticket, I tried to find a place to upload a screenshot to the github ticket, but couldn't find a way to do it. You are welcome to a data file. What is the best way to get it to you? The raw netCDF file is ~100 Mbytes (I can probably cut it down to a few Mb if needed). The file is currently at the DOE OLCF facility. Best wishes, Philip From: Thomas Maxwell [mailto:notifications@github.com] Cameron, -- Tom From: cameronsmith1 <notifications@github.commailto:notifications@github.commailto:notifications@github.com> I wanted to plot a variable with 3 spatial dimensions by animating over the 3D dimension. Hence, I tried to do a 3D_Scalar plot using xyt. UVCDAT didn't like the fact that there wasn't a time dimension. Perhaps not surprising, but it just dumped a bunch of output to the console without giving a helpful message within the GUI. I am using UVCDAT 2.0.0 on Rhea. The console errors were: Error Reading Variable No axis matching order spec t Traceback (most recent call last): � � � |
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Sounds good. Thanks, Tom. From: Thomas Maxwell [mailto:notifications@github.com] Philip, Thanks, From: , "Maxwell, Thomas P. (GSFC-606.2)[SCIENCE APPLICATIONS INTL CORP]" <thomas.maxwell@nasa.govmailto:thomas.maxwell@nasa.gov> Philip, Thanks, From: cameronsmith1 <notifications@github.commailto:notifications@github.com> Hi Tom, Clarification of the option and an improved error message is all that is needed for this ticket. For the other ticket, I tried to find a place to upload a screenshot to the github ticket, but couldn't find a way to do it. You are welcome to a data file. What is the best way to get it to you? The raw netCDF file is ~100 Mbytes (I can probably cut it down to a few Mb if needed). The file is currently at the DOE OLCF facility. Best wishes, Philip From: Thomas Maxwell [mailto:notifications@github.com] Cameron, -- Tom From: cameronsmith1 <notifications@github.commailto:notifications@github.commailto:notifications@github.com> I wanted to plot a variable with 3 spatial dimensions by animating over the 3D dimension. Hence, I tried to do a 3D_Scalar plot using xyt. UVCDAT didn't like the fact that there wasn't a time dimension. Perhaps not surprising, but it just dumped a bunch of output to the console without giving a helpful message within the GUI. I am using UVCDAT 2.0.0 on Rhea. The console errors were: Error Reading Variable No axis matching order spec t Traceback (most recent call last): — — — — |
I wanted to plot a variable with 3 spatial dimensions by animating over the 3D dimension. Hence, I tried to do a 3D_Scalar plot using xyt. UVCDAT didn't like the fact that there wasn't a time dimension. Perhaps not surprising, but it just dumped a bunch of output to the console without giving a helpful message within the GUI.
I am using UVCDAT 2.0.0 on Rhea.
The console errors were:
Error Reading Variable No axis matching order spec t
Error: can't find time slice data cube for variable DMS in dataset
Can't get Metadata!
[InputSpecs]: Error, Metadata for input 0 not found in ispec[7f94e18d0710]
Traceback (most recent call last):
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/DV3D/RectilinearGridPlot.py", line 402, in activateEvent
self.cropRegion = self.getVolumeBounds()
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/DV3D/RectilinearGridPlot.py", line 409, in getVolumeBounds
extent = args.get( "extent", self.input().GetExtent() )
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/DV3D/StructuredGridPlot.py", line 199, in input
input = self.setInputZScale( zscale_data, input_index )
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/DV3D/RectilinearGridPlot.py", line 1341, in setInputZScale
input = StructuredGridPlot.setInputZScale( self, zscale_data, input_index, **args )
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/DV3D/StructuredGridPlot.py", line 165, in setInputZScale
spacing = input.GetSpacing()
AttributeError: 'NoneType' object has no attribute 'GetSpacing'
Traceback (most recent call last):
File "/lustre/atlas2/csc121/world-shared/uvcdat/2.0.0/vistrails/vistrails/core/modules/vistrails_module.py", line 327, in update
self.compute()
File "/lustre/atlas2/csc121/world-shared/uvcdat/2.0.0/vistrails/vistrails/packages/uvcdat_cdms/init.py", line 1275, in compute
self.cellWidget = self.displayAndWait(QCDATWidget, input_ports)
File "/lustre/atlas2/csc121/world-shared/uvcdat/2.0.0/vistrails/vistrails/packages/spreadsheet/basic_widgets.py", line 247, in displayAndWait
return spreadsheetWindow.displayCellEvent(e)
File "/lustre/atlas2/csc121/world-shared/uvcdat/2.0.0/vistrails/vistrails/packages/spreadsheet/spreadsheet_window.py", line 491, in displayCellEvent
sheet.setCellByType(row, col, e.cellType, e.inputPorts)
File "/lustre/atlas2/csc121/world-shared/uvcdat/2.0.0/vistrails/vistrails/packages/spreadsheet/spreadsheet_tab.py", line 320, in setCellByType
newCell.updateContents(inputPorts)
File "/lustre/atlas2/csc121/world-shared/uvcdat/2.0.0/vistrails/vistrails/packages/uvcdat_cdms/init.py", line 1448, in updateContents
self.canvas.plot(cgm,*args,**kwargs)
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/vcs/Canvas.py", line 2578, in plot
a = self.__plot( arglist, keyargs )
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/vcs/Canvas.py", line 3644, in __plot
self.backend.plot(_arglist,__keyargs)
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/vcs/VTKPlots.py", line 363, in plot
self.plot3D(data1,data2,tpl,gm,ren,__kargs)
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/vcs/VTKPlots.py", line 532, in plot3D
g.gminit( data1, data2, roi=roi, axes=gm.axes, n_overview_points=n_overview_points, n_cores=gm.NumCores, renwin=ren.GetRenderWindow(), plot_attributes=gm.getPlotAttributes(), gmname=gm.g_name, cm=gm.cfgManager, *_kargs ) #, plot_type = PlotType.List )
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/DV3D/Application.py", line 64, in gminit
self.plot.gminit( var1, var2, *_args )
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/DV3D/StructuredGridPlot.py", line 641, in gminit
self.execute( )
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/DV3D/StructuredGridPlot.py", line 239, in execute
self.buildPipeline()
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/DV3D/RectilinearGridPlot.py", line 886, in buildPipeline
primaryInput = self.input()
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/DV3D/StructuredGridPlot.py", line 199, in input
input = self.setInputZScale( zscale_data, input_index )
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/DV3D/RectilinearGridPlot.py", line 1341, in setInputZScale
input = StructuredGridPlot.setInputZScale( self, zscale_data, input_index, *_args )
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/DV3D/StructuredGridPlot.py", line 165, in setInputZScale
spacing = input.GetSpacing()
AttributeError: 'NoneType' object has no attribute 'GetSpacing'
Traceback (most recent call last):
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/DV3D/RectilinearGridPlot.py", line 402, in activateEvent
self.cropRegion = self.getVolumeBounds()
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/DV3D/RectilinearGridPlot.py", line 409, in getVolumeBounds
extent = args.get( "extent", self.input().GetExtent() )
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/DV3D/StructuredGridPlot.py", line 199, in input
input = self.setInputZScale( zscale_data, input_index )
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/DV3D/RectilinearGridPlot.py", line 1341, in setInputZScale
input = StructuredGridPlot.setInputZScale( self, zscale_data, input_index, *_args )
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/DV3D/StructuredGridPlot.py", line 165, in setInputZScale
spacing = input.GetSpacing()
AttributeError: 'NoneType' object has no attribute 'GetSpacing'
Traceback (most recent call last):
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/DV3D/RectilinearGridPlot.py", line 402, in activateEvent
self.cropRegion = self.getVolumeBounds()
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/DV3D/RectilinearGridPlot.py", line 409, in getVolumeBounds
extent = args.get( "extent", self.input().GetExtent() )
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/DV3D/StructuredGridPlot.py", line 199, in input
input = self.setInputZScale( zscale_data, input_index )
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/DV3D/RectilinearGridPlot.py", line 1341, in setInputZScale
input = StructuredGridPlot.setInputZScale( self, zscale_data, input_index, *_args )
File "/lustre/atlas/world-shared/csc121/uvcdat/2.0.0/lib/python2.7/site-packages/DV3D/StructuredGridPlot.py", line 165, in setInputZScale
spacing = input.GetSpacing()
AttributeError: 'NoneType' object has no attribute 'GetSpacing'
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