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[Feature request] fastg to gfa converter #12

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Vini2 opened this issue Feb 17, 2023 · 1 comment
Open

[Feature request] fastg to gfa converter #12

Vini2 opened this issue Feb 17, 2023 · 1 comment
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@Vini2
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enhancement New feature or request

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@Vini2
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Vini2 commented Feb 17, 2023

Is your feature request related to a problem? Please describe.
Currently, phables takes assembly graph files only in gfa format.

Describe the solution you'd like
Add a converting step if fastg files are provided to convert to gfa format.
@Vini2 Vini2 self-assigned this Feb 17, 2023
@Vini2 Vini2 added the enhancement New feature or request label Feb 17, 2023
@pdec
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pdec commented Mar 14, 2024

The fastg2gfa referred in the docs for converting MegaHIT's assembly graph is a bit confusing and points to a deprecated repo.
I tried the gfatools and it seems to properly convert the .fastg into .gfa with gfatools view graph.fastg > graph.gfa

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