/
merge_vistrails.py
executable file
·66 lines (61 loc) · 3.08 KB
/
merge_vistrails.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
#!/usr/bin/env python
###############################################################################
##
## Copyright (C) 2011-2014, NYU-Poly.
## Copyright (C) 2006-2011, University of Utah.
## All rights reserved.
## Contact: contact@vistrails.org
##
## This file is part of VisTrails.
##
## "Redistribution and use in source and binary forms, with or without
## modification, are permitted provided that the following conditions are met:
##
## - Redistributions of source code must retain the above copyright notice,
## this list of conditions and the following disclaimer.
## - Redistributions in binary form must reproduce the above copyright
## notice, this list of conditions and the following disclaimer in the
## documentation and/or other materials provided with the distribution.
## - Neither the name of the University of Utah nor the names of its
## contributors may be used to endorse or promote products derived from
## this software without specific prior written permission.
##
## THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
## AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
## THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
## PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR
## CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
## EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
## PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
## OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
## WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
## OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
## ADVISED OF THE POSSIBILITY OF SUCH DAMAGE."
##
###############################################################################
#FIXME !!! DOES NOT MERGE EXECUTION LOGS STORED IN VT FILE !!!
import sys
if '../vistrails' not in sys.path:
sys.path.append('../vistrails')
import vistrails.db.services.vistrail
from vistrails.db.domain import DBModule, DBConnection, DBPort, DBFunction, \
DBParameter, DBLocation, DBPortSpec, DBTag, DBAnnotation, DBVistrail, \
DBAction
from vistrails.db.services import io
def main(out_fname, in_fnames):
"""main(out_fname: str, in_fnames: list<str>) -> None
Combines all vistrails specified in in_fnames into a single vistrail
by renumbering their ids
"""
# FIXME this breaks when you use abstractions!
(save_bundle, vt_save_dir) = io.open_bundle_from_zip_xml(DBVistrail.vtType, in_fnames[0])
for in_fname in in_fnames[1:]:
(new_save_bundle, new_save_dir) = io.open_bundle_from_zip_xml(DBVistrail.vtType, in_fname)
vistrails.db.services.vistrail.merge(save_bundle, new_save_bundle, "", True, vt_save_dir, new_save_dir)
io.save_bundle_to_zip_xml(save_bundle, out_fname)
if __name__ == '__main__':
if len(sys.argv) < 3:
print "Usage: %s [output filename] [list of input vistrails]" % \
sys.argv[0]
sys.exit(0)
main(sys.argv[1], sys.argv[2:])