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Came across this small issue today while running the following code:
dpout.highQuality <- MSstats::dataProcess(frag.mss,
MBimpute = FALSE,
featureSubset = "hiqhQuality", # <== typo hidden here; q vs g
remove_uninformative_feature_outlier = TRUE)
Error message is: Error in getOption("MSstatsLog")("INFO", msg) : object 'msg' not found
It was rather puzzling, and made me think a recent MSstats update had broken something. But notice the typo I made for featureSubset. It looks like when an unexpected value is given for featureSubset, the code tries to write a log message that is not yet initialized. I'm guessing the issue is in MSstatsSelectFeatures , where a fall back else {stop ("Unexpected featureSubset value, allowed values are highQuality, ...")}, would be an easy improvement and would have let me find my error much faster.
Thanks!
The text was updated successfully, but these errors were encountered:
Hello!
Came across this small issue today while running the following code:
Error message is:
Error in getOption("MSstatsLog")("INFO", msg) : object 'msg' not found
It was rather puzzling, and made me think a recent MSstats update had broken something. But notice the typo I made for
featureSubset
. It looks like when an unexpected value is given for featureSubset, the code tries to write a log message that is not yet initialized. I'm guessing the issue is inMSstatsSelectFeatures
, where a fall backelse {stop ("Unexpected featureSubset value, allowed values are highQuality, ...")}
, would be an easy improvement and would have let me find my error much faster.Thanks!
The text was updated successfully, but these errors were encountered: