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test_migrate_db.py
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test_migrate_db.py
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import json
from django.core.management import call_command
from django.core.management import CommandError
from django.test import TestCase
from public_interface.models import Vouchers
from public_interface.models import Sequences
from public_interface.models import FlickrImages
from public_interface.models import Primers
from public_interface.models import GeneSets
from public_interface.models import TaxonSets
from public_interface.management.commands import _migrate_db as migrate_script
class TestCustomCommand(TestCase):
def setUp(self):
args = []
opts = {'dumpfile': 'test_db_dump.xml', 'verbosity': 0}
cmd = 'migrate_db'
call_command(cmd, *args, **opts)
def test_no_input_file(self):
args = []
opts = {'verbosity': 0}
cmd = 'migrate_db'
self.assertRaises(CommandError, call_command, cmd, *args, **opts)
def test_tables_prefix(self):
args = []
opts = {'dumpfile': 'test_db_dump.xml', 'prefix': 'vosesq_', 'verbosity': 0}
cmd = 'migrate_db'
self.assertRaises(ValueError, call_command, cmd, *args, **opts)
def test_orden_none(self):
b = Vouchers.objects.get(code='CP100-09')
self.assertEqual('', b.orden)
def test_orden_null(self):
b = Vouchers.objects.get(code='CP100-10')
self.assertEqual('', b.orden)
def test_orden_space(self):
b = Vouchers.objects.get(code='CP100-12')
self.assertEqual('', b.orden)
def test_superfamily(self):
b = Vouchers.objects.get(code='CP100-10')
self.assertEqual('Papilionoidea', b.superfamily)
def test_family(self):
b = Vouchers.objects.get(code='CP100-09')
self.assertEqual('Nymphalidae', b.family)
def test_family_empty(self):
b = Vouchers.objects.get(code='CP100-10')
self.assertEqual('', b.family)
def test_family_space(self):
b = Vouchers.objects.get(code='CP100-11')
self.assertEqual('', b.family)
def test_subfamily(self):
b = Vouchers.objects.get(code='CP100-09')
self.assertEqual('Nymphalinae', b.subfamily)
def test_subfamily_empty(self):
b = Vouchers.objects.get(code='CP100-10')
self.assertEqual('', b.subfamily)
def test_subfamily_space(self):
b = Vouchers.objects.get(code='CP100-11')
self.assertEqual('', b.subfamily)
def test_subfamily_null(self):
b = Vouchers.objects.get(code='CP100-12')
self.assertEqual('', b.subfamily)
def test_tribe_null_with_space(self):
b = Vouchers.objects.get(code='CP100-09')
self.assertEqual('', b.tribe)
def test_genus(self):
b = Vouchers.objects.get(code='CP100-09')
self.assertEqual('Melitaea?', b.genus)
def test_accession(self):
b = Sequences.objects.get(code='CP100-10', gene_code='EF1a')
self.assertEqual('AY218269', b.accession)
def test_max_altitude_null_as_str(self):
b = Vouchers.objects.get(code='CP100-09')
self.assertEqual(None, b.max_altitude)
def test_max_altitude_null(self):
b = Vouchers.objects.get(code='CP100-11')
self.assertEqual(None, b.max_altitude)
def test_max_altitude_empty_with_space(self):
b = Vouchers.objects.get(code='CP100-10')
self.assertEqual(None, b.max_altitude)
def test_max_altitude1(self):
b = Vouchers.objects.get(code='CP100-12')
self.assertEqual(600, b.max_altitude)
def test_max_altitude2(self):
b = Vouchers.objects.get(code='CP100-13')
self.assertEqual(2500, b.max_altitude)
def test_max_altitude3(self):
b = Vouchers.objects.get(code='CP100-14')
self.assertEqual(2000, b.max_altitude)
def test_voucher_none(self):
b = Vouchers.objects.get(code='CP100-09')
self.assertEqual('n', b.voucher)
def test_voucher_spread(self):
b = Vouchers.objects.get(code='CP100-10')
self.assertEqual('s', b.voucher)
def test_voucher_unspread(self):
b = Vouchers.objects.get(code='CP100-11')
self.assertEqual('e', b.voucher)
def test_voucher_null(self):
b = Vouchers.objects.get(code='CP100-12')
self.assertEqual('n', b.voucher)
def test_voucher_empty(self):
b = Vouchers.objects.get(code='CP100-13')
self.assertEqual('n', b.voucher)
def test_voucher_photo(self):
b = Vouchers.objects.get(code='CP100-14')
self.assertEqual('p', b.voucher)
def test_voucher_lost(self):
b = Vouchers.objects.get(code='CP100-15')
self.assertEqual('l', b.voucher)
def test_voucher_destroyed(self):
b = Vouchers.objects.get(code='CP100-16')
self.assertEqual('d', b.voucher)
def test_voucher_no_photo(self):
b = Vouchers.objects.get(code='CP100-17')
self.assertEqual('e', b.voucher)
def test_voucher_other(self):
b = Vouchers.objects.get(code='CP100-17')
self.assertEqual('e', b.voucher)
def test_voucher_image(self):
b = Vouchers.objects.get(code='CP100-09')
c = FlickrImages.objects.all().filter(voucher=b)
results = [i.voucherImage for i in c]
self.assertTrue('https://www.flickr.com/photos/nsg_db/15728978251/' in results)
def test_country(self):
b = Vouchers.objects.get(code='CP100-09')
self.assertEqual('FINLAND', b.country)
def test_primers(self):
b = Sequences.objects.get(code='CP100-10', gene_code='EF1a')
c = Primers.objects.filter(for_sequence=b)
primers_f = [i.primer_f for i in c]
self.assertTrue('Cho', primers_f)
def test_primers_some_none(self):
b = Sequences.objects.get(code='CP100-10', gene_code='wingless')
c = Primers.objects.filter(for_sequence=b)
primers_f = [i.primer_f for i in c]
self.assertEqual(['lep1'], primers_f)
def test_geneset_name(self):
b = GeneSets.objects.get(geneset_name='4genes')
self.assertEqual(b.geneset_name, '4genes')
def test_geneset_creator(self):
b = GeneSets.objects.get(geneset_name='4genes')
self.assertEqual(b.geneset_creator, 'Niklas')
def test_geneset_description(self):
b = GeneSets.objects.get(geneset_name='4genes')
self.assertEqual(b.geneset_description, '4 standard genes')
def test_geneset_description_empty(self):
b = GeneSets.objects.get(geneset_name='2genes')
self.assertEqual(b.geneset_description, '')
def test_geneset_list(self):
b = GeneSets.objects.get(geneset_name='4genes')
expected = ['COI', 'EF1a', 'wingless', '16S']
self.assertEqual(expected, json.loads(b.geneset_list))
def test_taxonset_name(self):
b = TaxonSets.objects.get(taxonset_name='Erebia')
self.assertEqual(b.taxonset_name, 'Erebia')
def test_taxonset_list(self):
b = TaxonSets.objects.get(taxonset_name='Erebia')
expected = ['CP100-10', 'CP100-11']
self.assertEqual(expected, json.loads(b.taxonset_list))
def test_type_species_dont_know(self):
value = '0'
expected = 'd'
result = migrate_script.parse_type_species(value)
self.assertEqual(expected, result)
def test_type_species_yes(self):
value = '1'
expected = 'y'
result = migrate_script.parse_type_species(value)
self.assertEqual(expected, result)
def test_type_species_no(self):
value = '2'
expected = 'n'
result = migrate_script.parse_type_species(value)
self.assertEqual(expected, result)
def test_type_species_null(self):
value = None
expected = 'd'
result = migrate_script.parse_type_species(value)
self.assertEqual(expected, result)