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Allatom-polymere-system-in-VMD

Create allatom polymere system from .xyz file in VMD How i made file you can check this

First you need to download the VMD Download VMD

Download or clone script for VMD to duplicate molecule

After installing open your_file.xyz in VMD "File->New Molecular"

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Hit button Browse and choose path_to_file.xyz

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In Viewport "VMD Disply" you can zoom in and out your molecular Also it opens in "VMD Main"

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In VMD type "topo" to start ToopoTools and pless Enter(Win), Return(Mac)

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ScreenShot

Open "main.txt"downloaded scriptand chenge your name file.xyz and file.PDB "set fname YOUR_FILE_NAME.xyz" | animate "write pdb PATH_TO_FILE.pdb"

Then copy(Ctrl+C | command+C) downloaded script and pase(Ctrl+V | command+V) in to "startup.command VMD" window

And there you have your structure of polymere

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Thanks to the department Plasma chemistry and nanotechnology of high molecular weight materials (PNTHM)

Special thanks to: Viktor Semyonovich Zheltukhin | Emil Faatovich Voznesensky | Yulia Aleksandrovna Timoshina