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Issue about new FreeSurferPipeline #100

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QunjunLIANG opened this issue Mar 21, 2019 · 5 comments
Closed

Issue about new FreeSurferPipeline #100

QunjunLIANG opened this issue Mar 21, 2019 · 5 comments

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@QunjunLIANG
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Dear experts,

Environment: HCP Pipeline v4.0.0, FreeSurfer v6.0.0, Ubuntu 14.04

I recently used the FreeSurfer pipeline to preprocess my data while an error came out.
FreeSueferPipeline.sh: ABORTING: unrecognized option: --printcom=

But when I have switched the pipeline utility to FreeSurfer-5.3.0, it worked without this error.

What should I do to fix this issue?
@glasserm
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Best to ask this on hcp-users@humanconnectome.org where we provide support for users. This is mainly for development issues.

@tbbrown
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tbbrown commented Mar 26, 2019

  • Reopening as record of issue related to a bugfix.
  • Fix this bug/issue by removing --printcom= flag from example script: FreeSurferPipelineBatch.sh

@tbbrown tbbrown reopened this Mar 26, 2019
@tbbrown tbbrown mentioned this issue Mar 26, 2019
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@mharms
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mharms commented May 31, 2019

Closing this issue, as it now appears to be resolved.

@mharms mharms closed this as completed May 31, 2019
@mlueckel mlueckel mentioned this issue Jul 30, 2021
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@betsy1226
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Have you solved problem? I met the same problem, while removing --printcom= flag from FreeSurferPipelineBatch.sh seemed not worked.

@coalsont
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Please make sure you are using the latest release.

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6 participants
@coalsont @glasserm @mharms @tbbrown @QunjunLIANG @betsy1226