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PFAM_domain
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PFAM_domain
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Sequence Domain Start End Accession Score E-value Clan Description Predicted by Link to Pfam
YP_009362297.1 CRPV_capsid 633 849 PF08762.10 48.9 5.80E-13 CRPV capsid protein like HMMER 3.1b1 (May 2013)
YP_009362297.1 Rhv 66 239 PF00073.20 28.2 1.20E-06 picornavirus capsid protein HMMER 3.1b1 (May 2013)
YP_009362297.1 Rhv 446 556 PF00073.20 20.9 2.20E-04 picornavirus capsid protein HMMER 3.1b1 (May 2013)
YP_009552832.1 RdRP_1 1086 1592 PF00680.20 172.9 8.60E-51 RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009552832.1 RNA_helicase 340 448 PF00910.22 65.7 4.10E-18 RNA helicase HMMER 3.1b1 (May 2013)
YP_009259669.1 Viral_coat 77 270 PF00729.18 230.7 1.50E-68 Viral coat protein (S domain) HMMER 3.1b1 (May 2013)
YP_009551557.1 RdRP_4 79 537 PF02123.16 233.6 4.50E-69 Viral RNA-directed RNA-polymerase HMMER 3.1b1 (May 2013)
YP_009551962.1 Rhv 390 498 PF00073.20 43.3 2.80E-11 picornavirus capsid protein HMMER 3.1b1 (May 2013)
YP_009551962.1 CRPV_capsid 577 791 PF08762.10 27.4 2.30E-06 CRPV capsid protein like HMMER 3.1b1 (May 2013)
YP_009551962.1 Rhv 50 200 PF00073.20 24.2 2.20E-05 picornavirus capsid protein HMMER 3.1b1 (May 2013)
YP_009118286.1 RNA_helicase 129 228 PF00910.22 102.8 1.20E-29 RNA helicase HMMER 3.1b1 (May 2013)
YP_009664724.1 RdRP_1 1828 2281 PF00680.20 299.1 4.90E-89 RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009664724.1 Rhv 186 391 PF00073.20 112.3 1.80E-32 picornavirus capsid protein HMMER 3.1b1 (May 2013)
YP_009664724.1 RNA_helicase 1278 1379 PF00910.22 105 2.50E-30 RNA helicase HMMER 3.1b1 (May 2013)
YP_009664724.1 Rhv 456 615 PF00073.20 64.7 7.60E-18 picornavirus capsid protein HMMER 3.1b1 (May 2013)
YP_009664724.1 Peptidase_C3 1606 1782 PF00548.20 58.4 8.40E-16 3C cysteine protease (picornain 3C) HMMER 3.1b1 (May 2013)
YP_009664724.1 Rhv 752 855 PF00073.20 24.4 1.80E-05 picornavirus capsid protein HMMER 3.1b1 (May 2013)
YP_009552119.1 RdRP_1 2033 2542 PF00680.20 189.9 6.20E-56 RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009552119.1 RNA_helicase 1186 1294 PF00910.22 76.4 2.00E-21 RNA helicase HMMER 3.1b1 (May 2013)
YP_009552119.1 Peptidase_C3 1763 1963 PF00548.20 23.6 4.10E-05 3C cysteine protease (picornain 3C) HMMER 3.1b1 (May 2013)
YP_009551543.1 RdRP_1 1239 1743 PF00680.20 263.6 2.80E-78 RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009551543.1 RNA_helicase 494 599 PF00910.22 73.6 1.40E-20 RNA helicase HMMER 3.1b1 (May 2013)
YP_009666857.1 Dicistro_VP4 305 357 PF11492.8 32 9.10E-08 Cricket paralysis virus, VP4 HMMER 3.1b1 (May 2013)
YP_009666857.1 CRPV_capsid 652 833 PF08762.10 27.7 1.90E-06 CRPV capsid protein like HMMER 3.1b1 (May 2013)
YP_459960.2 RdRP_3 266 746 PF00998.23 618.8 6.20E-186 Viral RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009551610.1 Totivirus_coat 196 327 PF05518.11 25.9 2.50E-06 Totivirus coat protein HMMER 3.1b1 (May 2013)
YP_009179216.1 RdRP_1 1753 2223 PF00680.20 332 5.20E-99 RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009179216.1 HAV_VP 548 715 PF12944.7 298.6 1.20E-89 Hepatitis A virus viral protein VP HMMER 3.1b1 (May 2013)
YP_009179216.1 RNA_helicase 1219 1322 PF00910.22 112.4 1.20E-32 RNA helicase HMMER 3.1b1 (May 2013)
YP_009179216.1 Rhv 46 215 PF00073.20 109.9 9.80E-32 picornavirus capsid protein HMMER 3.1b1 (May 2013)
YP_009179216.1 Rhv 319 447 PF00073.20 41.5 1.00E-10 picornavirus capsid protein HMMER 3.1b1 (May 2013)
YP_009179216.1 Peptidase_C3 1526 1718 PF00548.20 28.3 1.40E-06 3C cysteine protease (picornain 3C) HMMER 3.1b1 (May 2013)
YP_009552078.1 Peptidase_C3G 2634 2864 PF12381.8 294.5 4.80E-88 Tungro spherical virus-type peptidase HMMER 3.1b1 (May 2013)
YP_009552078.1 RdRP_1 2903 3413 PF00680.20 263.7 2.60E-78 RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009552078.1 Waikav_capsid_1 711 907 PF12264.8 248.4 4.10E-74 Waikavirus capsid protein 1 HMMER 3.1b1 (May 2013)
YP_009552078.1 RNA_helicase 1800 1906 PF00910.22 98.6 2.50E-28 RNA helicase HMMER 3.1b1 (May 2013)
YP_009552078.1 Rhv 895 1061 PF00073.20 33.5 3.00E-08 picornavirus capsid protein HMMER 3.1b1 (May 2013)
YP_009666352.1 Dicistro_VP4 372 426 PF11492.8 56.5 2.00E-15 Cricket paralysis virus, VP4 HMMER 3.1b1 (May 2013)
YP_009666351.1 RdRP_1 1146 1578 PF00680.20 158 3.00E-46 RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009666351.1 RNA_helicase 394 505 PF00910.22 55.6 5.90E-15 RNA helicase HMMER 3.1b1 (May 2013)
YP_009666856.1 RdRP_1 1312 1751 PF00680.20 128.8 2.10E-37 RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009666856.1 RNA_helicase 521 631 PF00910.22 33.3 5.00E-08 RNA helicase HMMER 3.1b1 (May 2013)
YP_009508869.1 RdRP_1 1173 1676 PF00680.20 294.3 1.40E-87 RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009508869.1 RNA_helicase 474 578 PF00910.22 90.7 6.90E-26 RNA helicase HMMER 3.1b1 (May 2013)
YP_009513028.1 RdRP_1 1875 2327 PF00680.20 446.7 8.30E-134 RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009513028.1 Peptidase_C28 1 201 PF05408.11 415.3 3.70E-125 Foot-and-mouth virus L-proteinase HMMER 3.1b1 (May 2013)
YP_009513028.1 Peptidase_C3 1652 1836 PF00548.20 206.5 2.70E-61 3C cysteine protease (picornain 3C) HMMER 3.1b1 (May 2013)
YP_009513028.1 VP4_2 202 285 PF08935.10 142.5 4.50E-42 Viral protein VP4 subunit HMMER 3.1b1 (May 2013)
YP_009513028.1 Rhv 311 475 PF00073.20 142.6 9.10E-42 picornavirus capsid protein HMMER 3.1b1 (May 2013)
YP_009513028.1 RNA_helicase 1213 1315 PF00910.22 108.4 2.20E-31 RNA helicase HMMER 3.1b1 (May 2013)
YP_009513028.1 Rhv 534 692 PF00073.20 97.3 7.50E-28 picornavirus capsid protein HMMER 3.1b1 (May 2013)
YP_009513028.1 Rhv 720 872 PF00073.20 60.4 1.60E-16 picornavirus capsid protein HMMER 3.1b1 (May 2013)
YP_009666859.1 Dicistro_VP4 271 327 PF11492.8 38.6 7.40E-10 Cricket paralysis virus, VP4 HMMER 3.1b1 (May 2013)
YP_009666859.1 CRPV_capsid 624 855 PF08762.10 33.5 3.00E-08 CRPV capsid protein like HMMER 3.1b1 (May 2013)
YP_009407937.1 RdRP_1 1782 2290 PF00680.20 152.8 1.10E-44 RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009407937.1 RNA_helicase 748 852 PF00910.22 84.2 7.60E-24 RNA helicase HMMER 3.1b1 (May 2013)
YP_009553259.1 RdRP_1 2656 3159 PF00680.20 202 1.40E-59 RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009553259.1 RNA_helicase 1580 1687 PF00910.22 73.3 1.80E-20 RNA helicase HMMER 3.1b1 (May 2013)
YP_009553259.1 Rhv 671 780 PF00073.20 42.5 5.00E-11 picornavirus capsid protein HMMER 3.1b1 (May 2013)
YP_009553259.1 CRPV_capsid 1029 1247 PF08762.10 35.5 7.50E-09 CRPV capsid protein like HMMER 3.1b1 (May 2013)
YP_009553259.1 Rhv 410 505 PF00073.20 25.3 9.80E-06 picornavirus capsid protein HMMER 3.1b1 (May 2013)
YP_009553600.1 RdRP_1 1720 2220 PF00680.20 214.6 2.10E-63 RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009553600.1 RNA_helicase 699 809 PF00910.22 65 7.10E-18 RNA helicase HMMER 3.1b1 (May 2013)
YP_009553600.1 Peptidase_C3 1449 1643 PF00548.20 22.8 7.30E-05 3C cysteine protease (picornain 3C) HMMER 3.1b1 (May 2013)
YP_009666860.1 RdRP_1 1329 1764 PF00680.20 141.9 2.10E-41 RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009666860.1 RNA_helicase 470 580 PF00910.22 49.1 6.20E-13 RNA helicase HMMER 3.1b1 (May 2013)
YP_009552788.1 Totivirus_coat 160 402 PF05518.11 40.9 7.20E-11 Totivirus coat protein HMMER 3.1b1 (May 2013)
YP_009666861.1 Dicistro_VP4 225 281 PF11492.8 41 1.30E-10 Cricket paralysis virus, VP4 HMMER 3.1b1 (May 2013)
YP_009666861.1 Rhv 34 175 PF00073.20 28.8 8.40E-07 picornavirus capsid protein HMMER 3.1b1 (May 2013)
YP_009666861.1 CRPV_capsid 586 818 PF08762.10 25 1.20E-05 CRPV capsid protein like HMMER 3.1b1 (May 2013)
YP_009508936.1 RNA_helicase 125 224 PF00910.22 107.3 4.90E-31 RNA helicase HMMER 3.1b1 (May 2013)
YP_009552779.1 RdRP_1 1337 1796 PF00680.20 147.6 4.10E-43 RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009552779.1 Rhv 1870 2028 PF00073.20 25.4 9.10E-06 picornavirus capsid protein HMMER 3.1b1 (May 2013)
YP_009552779.1 RNA_helicase 571 675 PF00910.22 22.2 1.40E-04 RNA helicase HMMER 3.1b1 (May 2013)
YP_009666360.1 RdRP_1 1256 1708 PF00680.20 150.2 6.50E-44 RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009666360.1 RNA_helicase 479 590 PF00910.22 47.1 2.60E-12 RNA helicase HMMER 3.1b1 (May 2013)
YP_009667031.1 RdRP_1 1197 1636 PF00680.20 134.2 4.70E-39 RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009667031.1 RNA_helicase 388 498 PF00910.22 49.1 6.00E-13 RNA helicase HMMER 3.1b1 (May 2013)
YP_009508875.1 RdRP_1 1241 1733 PF00680.20 319.3 3.60E-95 RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009508875.1 RNA_helicase 552 655 PF00910.22 102 2.20E-29 RNA helicase HMMER 3.1b1 (May 2013)
YP_009508875.1 Peptidase_C3 1127 1190 PF00548.20 22.7 7.80E-05 3C cysteine protease (picornain 3C) HMMER 3.1b1 (May 2013)
YP_009551963.1 RdRP_1 1291 1814 PF00680.20 221.1 2.10E-65 RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009551963.1 RNA_helicase 549 662 PF00910.22 58.9 5.50E-16 RNA helicase HMMER 3.1b1 (May 2013)
YP_009552789.1 RdRP_4 259 712 PF02123.16 289.6 4.40E-86 Viral RNA-directed RNA-polymerase HMMER 3.1b1 (May 2013)
YP_009553221.1 Viral_coat 70 262 PF00729.18 226 4.10E-67 Viral coat protein (S domain) HMMER 3.1b1 (May 2013)
YP_009553501.1 RdRP_1 2594 3109 PF00680.20 219.2 8.00E-65 RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009553501.1 RNA_helicase 1741 1849 PF00910.22 53.7 2.20E-14 RNA helicase HMMER 3.1b1 (May 2013)
YP_009553501.1 CRPV_capsid 1117 1343 PF08762.10 25.4 9.60E-06 CRPV capsid protein like HMMER 3.1b1 (May 2013)
YP_009553501.1 Calici_coat 662 887 PF00915.20 23.3 2.50E-05 Calicivirus coat protein HMMER 3.1b1 (May 2013)
YP_009666361.1 Dicistro_VP4 308 362 PF11492.8 54 1.20E-14 Cricket paralysis virus, VP4 HMMER 3.1b1 (May 2013)
YP_009666361.1 CRPV_capsid 645 881 PF08762.10 21.9 1.10E-04 CRPV capsid protein like HMMER 3.1b1 (May 2013)
YP_009553715.1 RNA_helicase 142 245 PF00910.22 113.2 6.90E-33 RNA helicase HMMER 3.1b1 (May 2013)
YP_009666858.1 RdRP_1 1217 1658 PF00680.20 134.7 3.40E-39 RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009666858.1 RNA_helicase 423 533 PF00910.22 43.5 3.30E-11 RNA helicase HMMER 3.1b1 (May 2013)
YP_009513030.1 RdRP_1 1811 2283 PF00680.20 221.9 1.30E-65 RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009513030.1 RNA_helicase 1276 1375 PF00910.22 77.9 6.90E-22 RNA helicase HMMER 3.1b1 (May 2013)
YP_009513030.1 Rhv 45 211 PF00073.20 56 3.50E-15 picornavirus capsid protein HMMER 3.1b1 (May 2013)
YP_009513030.1 Rhv 316 428 PF00073.20 25.4 9.30E-06 picornavirus capsid protein HMMER 3.1b1 (May 2013)
YP_009513030.1 Peptidase_C3 1647 1781 PF00548.20 24.4 2.30E-05 3C cysteine protease (picornain 3C) HMMER 3.1b1 (May 2013)
YP_009667032.1 Dicistro_VP4 266 322 PF11492.8 59.5 2.20E-16 Cricket paralysis virus, VP4 HMMER 3.1b1 (May 2013)
YP_009667032.1 CRPV_capsid 622 862 PF08762.10 38.9 6.80E-10 CRPV capsid protein like HMMER 3.1b1 (May 2013)
YP_009667032.1 Rhv 77 219 PF00073.20 24.7 1.50E-05 picornavirus capsid protein HMMER 3.1b1 (May 2013)
YP_001285409.1 RdRP_1 2483 2971 PF00680.20 187 4.70E-55 RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_001285409.1 RNA_helicase 1577 1685 PF00910.22 74.3 8.70E-21 RNA helicase HMMER 3.1b1 (May 2013)
YP_001285409.1 Rhv 659 755 PF00073.20 33.9 2.20E-08 picornavirus capsid protein HMMER 3.1b1 (May 2013)
YP_001285409.1 CRPV_capsid 1024 1254 PF08762.10 32.6 5.80E-08 CRPV capsid protein like HMMER 3.1b1 (May 2013)
YP_009362296.1 RdRP_1 1196 1689 PF00680.20 148 3.20E-43 RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009551566.1 Mitovir_RNA_pol 155 623 PF05919.11 335.7 6.50E-100 Mitovirus RNA-dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009666362.1 RdRP_1 1194 1638 PF00680.20 168 2.60E-49 RNA dependent RNA polymerase HMMER 3.1b1 (May 2013)
YP_009666362.1 RNA_helicase 409 520 PF00910.22 56.3 3.50E-15 RNA helicase HMMER 3.1b1 (May 2013)
YP_009666362.1 Rhv 1805 1946 PF00073.20 31.2 1.50E-07 picornavirus capsid protein HMMER 3.1b1 (May 2013)
YP_009666362.1 Dicistro_VP4 1983 2037 PF11492.8 24.9 1.50E-05 Cricket paralysis virus, VP4 HMMER 3.1b1 (May 2013)