-
Notifications
You must be signed in to change notification settings - Fork 20
/
ddcc-tr-valuesets.fsh
434 lines (362 loc) · 10.9 KB
/
ddcc-tr-valuesets.fsh
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
Alias: $ICD9CM = http://hl7.org/fhir/sid/icd-9-cm
Alias: $ICD10 = http://hl7.org/fhir/sid/icd-10
Alias: $ICD11 = http://id.who.int/icd11/mms
Alias: $ICHI = http://id.who.int/icd/entity
Alias: $LOINC = http://loinc.org
Alias: SCT = http://snomed.info/sct
ValueSet: WHO_DDCC_Agent_Targeted_COVID_19
Id: who-ddcc-agent-targeted-covid-19
Title: "WHO Agent Targeted (COVID-19)"
Description: """
WHO Agent Targeted List (COVID-19) from [ICD 11](https://icd.who.int/browse11)
"""
* ^status = #draft
* include $ICD11#XN109 "SARS-CoV-2"
* include $ICD11#XN0HL "SARS-CoV-2 Alpha"
* include $ICD11#XN4Q7 "SARS-CoV-2 Beta"
* include $ICD11#XN5BQ "SARS-CoV-2 Gamma"
* include $ICD11#XN8V6 "SARS-CoV-2 Delta"
* include $ICD11#XN1GK "SARS-CoV-2 Epsilon"
* include $ICD11#XN3ZE "SARS-CoV-2 Zeta"
* include $ICD11#XN2V4 "SARS-CoV-2 Eta"
* include $ICD11#XN4Q1 "SARS-CoV-2 Theta"
* include $ICD11#XN3UD "SARS-CoV-2 Iota"
* include $ICD11#XN9L8 "SARS-CoV-2 Kappa"
* include $ICD11#XN6AM "SARS-CoV-2 Lambda"
* include $ICD11#XN39J "SARS-CoV-2 Mu"
* include $ICD11#XN161 "SARS-CoV-2 Omicron"
ValueSet: WHO_DDCC_Type_of_Test_COVID_19
Id: who-ddcc-type-of-test-covid-19
Title: "WHO Type of Covid-19 Test"
Description: """
WHO Type of COVID-19 Test
"""
* ^status = #draft
* include $ICHI#1334426561 "Viral nucleic acid amplification test or NAAT"
* include $ICHI#2056159157 "Rapid immunoassay detecting viral proteins or Ag-RDT"
ValueSet: WHO_DDCC_Sample_Origin_COVID_19
Id: who-ddcc-sample-origin-covid-19
Title: "WHO Speciman Sample Origin (COVID-19)"
Description: """
WHO Speciman Sample Origin List (COVID-19)
"""
* ^status = #draft
* include $ICHI#50872817 "Nasopharyngeal swab"
* include $ICHI#555916027 "Oropharyngeal swab"
// * include $ICHI#555916027 "Pharyngeal swab"
* include $ICHI#608172011 "Swab from nasal sinus"
* include $ICHI#1162766848 "Saliva specimen"
* include $ICHI#1695591348 "Blood specimen"
// * include $ICHI#1695591348 "Plasma specimen"
// * include $ICHI#1695591348 "Serum specimen"
// * include $ICHI#1695591348 "Acellular blood (serum or plasma) specimen"
ValueSet: WHO_DDCC_Test_Result_COVID_19
Id: who-ddcc-test-result-covid-19
Title: "WHO Test Result (COVID-19)"
Description: """
WHO COVID-19 Test Result from [ICD 11](https://icd.who.int/browse11)
"""
* ^status = #draft
* include $ICD11#RA01.0 "Detected"
* include $ICD11#QA02 "Not Detected"
CodeSystem: DDCC_Device_Property_CodeSystem
Id: DDCC-Device-Property-CodeSystem
Title: "DDCC Device Property Codes"
Description: "Possible properties available for devices."
* ^experimental = false
* ^caseSensitive = true
* #pathogen "Pathogen Targeted"
* #brand "Test Brand"
ValueSet: DDCC_Device_Property_ValueSet
Id: DDCC-Device-Property-ValueSet
Title: "DDCC Device Property Codes"
Description: "Properties of DDCC devices"
* include codes from system DDCC_Device_Property_CodeSystem
Instance: who-ddcc-map-loinc-sct-type-of-test
InstanceOf: ConceptMap
Description: "Mapping from LOINC to SNOMED CT for COVID-19 Type of Test"
Usage: #definition
* id = "who-ddcc-map-loinc-sct-type-of-test"
* name = "LOINC_SNOMED_CT_COVID19_Type_of_Test"
* title = "ConceptMap from LOINC to SNOMED CT for Type of Test"
* status = #draft
* experimental = true
* date = "2021-12-16"
* description = "Rule-based mappings between LOINC and SNOMED CT for COVID-19 Type of Test"
* group[+]
* source = $LOINC
* target = SCT
* element[+]
* code = #LP6464-4
* target[+]
* code = #117244003
* equivalence = #equivalent
* element[+]
* code = #LP217198-3
* target[+]
* code = #414464004
* equivalence = #equivalent
Instance: who-ddcc-map-ichi-loinc-type-of-test
InstanceOf: ConceptMap
Description: "Mapping from ICHI to LOINC for COVID-19 Type of Test"
Usage: #definition
* id = "who-ddcc-map-ichi-loinc-type-of-test"
* name = "ICHI_LOINC_COVID19_Type_of_Test"
* title = "ConceptMap from ICHI to LOINC for Type of Test"
* status = #draft
* experimental = true
* date = "2022-03-22"
* description = "Rule-based mappings between ICHI and LOINC for COVID-19 Type of Test"
* group[+]
* source = $ICHI
* target = $LOINC
* element[+]
* code = #1334426561
* target[+]
* code = #LP6464-4
* equivalence = #equivalent
* element[+]
* code = #2056159157
* target[+]
* code = #LP217198-3
* equivalence = #equivalent
Instance: who-ddcc-map-ichi-sct-type-of-test
InstanceOf: ConceptMap
Description: "Mapping from ICHI to SNOMED CT for COVID-19 Type of Test"
Usage: #definition
* id = "who-ddcc-map-ichi-sct-type-of-test"
* name = "ICHI_SNOMED_CT_COVID19_Type_of_Test"
* title = "ConceptMap from ICHI to SNOMED CT for Type of Test"
* status = #draft
* experimental = true
* date = "2022-03-22"
* description = "Rule-based mappings between ICHI and SNOMED CT for COVID-19 Type of Test"
* group[+]
* source = $ICHI
* target = SCT
* element[+]
* code = #1334426561
* target[+]
* code = #2056159157
* equivalence = #equivalent
* element[+]
* code = #LP217198-3
* target[+]
* code = #414464004
* equivalence = #equivalent
Instance: who-ddcc-map-icd11-sct-test-result
InstanceOf: ConceptMap
Description: "Mapping from ICD-11 to SNOMED CT for COVID-19 Test Result"
Usage: #definition
* id = "who-ddcc-map-icd11-sct-test-result"
* name = "ICD11_SNOMED_CT_COVID19_Test_Result"
* title = "ConceptMap from ICD-11 to SNOMED CT for Test Result"
* status = #draft
* experimental = true
* date = "2021-12-16"
* description = "Rule-based mappings between ICD-11 and SNOMED CT for COVID-19 Test Result"
* group[+]
* source = $ICD11
* target = SCT
* element[+]
* code = #RA01.0
* target[+]
* code = #1240581000000104
* equivalence = #equivalent
* element[+]
* code = #QA02
* target[+]
* code = #1240591000000102
* equivalence = #equivalent
Instance: who-ddcc-map-ichi-sct-specimen-origin
InstanceOf: ConceptMap
Description: "Mapping from ICHI to SNOMED CT for COVID-19 Specimen Origin"
Usage: #definition
* id = "who-ddcc-map-ichi-sct-specimen-origin"
* name = "ICHI_SNOMED_CT_COVID19_Specimen_Origin"
* title = "ConceptMap from ICHI to SNOMED CT for Specimen Origin"
* status = #draft
* experimental = true
* date = "2022-03-22"
* description = "Rule-based mappings between ICHI and SNOMED CT for COVID-19 Specimen Origin"
* group[+]
* source = $ICHI
* target = SCT
* element[+]
* code = #50872817
* target[+]
* code = #258500001
* equivalence = #equivalent
* element[+]
* code = #555916027
* target[+]
* code = #461911000124106
* equivalence = #wider
* element[+]
* code = #555916027
* target[+]
* code = #472881004
* equivalence = #wider
* element[+]
* code = #608172011
* target[+]
* code = #472901003
* equivalence = #equivalent
* element[+]
* code = #1162766848
* target[+]
* code = #119342007
* equivalence = #equivalent
* element[+]
* code = #1695591348
* target[+]
* code = #119297000
* equivalence = #wider
* element[+]
* code = #1695591348
* target[+]
* code = #119361006
* equivalence = #wider
* element[+]
* code = #1695591348
* target[+]
* code = #119364003
* equivalence = #wider
* element[+]
* code = #1695591348
* target[+]
* code = #122592007
* equivalence = #wider
Instance: who-ddcc-map-sct-ichi-specimen-origin
InstanceOf: ConceptMap
Description: "Mapping from SNOMED CT to ICHI for COVID-19 Specimen Origin"
Usage: #definition
* id = "who-ddcc-map-sct-ichi-specimen-origin"
* name = "SNOMED_CT_ICHI_COVID19_Specimen_Origin"
* title = "ConceptMap from SNOMED CT to ICHI for Specimen Origin"
* status = #draft
* experimental = true
* date = "2022-03-22"
* description = "Rule-based mappings between SNOMED CT and ICHI for COVID-19 Specimen Origin"
* group[+]
* source = SCT
* target = $ICHI
* element[+]
* code = #258500001
* target[+]
* code = #50872817
* equivalence = #equivalent
* element[+]
* code = #461911000124106
* target[+]
* code = #555916027
* equivalence = #equivalent
* element[+]
* code = #472881004
* target[+]
* code = #555916027
* equivalence = #equivalent
* element[+]
* code = #472901003
* target[+]
* code = #608172011
* equivalence = #equivalent
* element[+]
* code = #119342007
* target[+]
* code = #1162766848
* equivalence = #equivalent
* element[+]
* code = #119297000
* target[+]
* code = #1695591348
* equivalence = #equivalent
* element[+]
* code = #119361006
* target[+]
* code = #1695591348
* equivalence = #equivalent
* element[+]
* code = #119364003
* target[+]
* code = #1695591348
* equivalence = #equivalent
* element[+]
* code = #122592007
* target[+]
* code = #1695591348
* equivalence = #equivalent
Instance: who-ddcc-map-icd11-sct-agent-targeted
InstanceOf: ConceptMap
Description: "Mapping from ICD-11 to SNOMED CT for COVID-19 Agent Targeted"
Usage: #definition
* id = "who-ddcc-map-icd11-sct-agent-targeted"
* name = "ICD11_SNOMED_CT_COVID19_Agent_Targeted"
* title = "ConceptMap from ICD-11 to SNOMED CT for Agent Targeted"
* status = #draft
* experimental = true
* date = "2021-12-16"
* description = "Rule-based mappings between ICD-11 and SNOMED CT for COVID-19 Agent Targeted"
* group[+]
* source = $ICD11
* target = SCT
* element[+]
* code = #XN109
* target[+]
* code = #840533007
* equivalence = #equivalent
* element[+]
* code = #XN0HL
* target[+]
* code = #840533007
* equivalence = #wider
* element[+]
* code = #XN4Q7
* target[+]
* code = #840533007
* equivalence = #wider
* element[+]
* code = #XN5BQ
* target[+]
* code = #840533007
* equivalence = #wider
* element[+]
* code = #XN8V6
* target[+]
* code = #840533007
* equivalence = #wider
* element[+]
* code = #XN1GK
* target[+]
* code = #840533007
* equivalence = #wider
* element[+]
* code = #XN3ZE
* target[+]
* code = #840533007
* equivalence = #wider
* element[+]
* code = #XN2V4
* target[+]
* code = #840533007
* equivalence = #wider
* element[+]
* code = #XN4Q1
* target[+]
* code = #840533007
* equivalence = #wider
* element[+]
* code = #XN3UD
* target[+]
* code = #840533007
* equivalence = #wider
* element[+]
* code = #XN9L8
* target[+]
* code = #840533007
* equivalence = #wider
* element[+]
* code = #XN6AM
* target[+]
* code = #840533007
* equivalence = #wider