The data and code used to analyze the microbiome diversity and thier community dynamics at Tel Megiddo (Israel) are shown here.
- TelM_MS_analysis.r
The main code used to analyze microbiome samples collected from Tel Megiddo. - packages.r
The R packages needed in analysis code.
- Metadata_Monumentome_2022-04-25.csv:
Metadata and geographical information for ancient microbiome samples. - monument_taxonomic_level-Adjust_final.csv:
The taxonomical level annotation for microbiome found in samples - monumentome_read_abundance.csv:
The read abundance for microbiome in samples- Column 1: Sample ID
-TelMegiddo - sampling_final.xlsx:
Sampling location description of Tel Megiddo.
-Metasub/MetaSub_taxa_city_proportion.csv Metasub microbiome data which is used to do the comparsion with microbe in Tel Megiddo.