run_mytask_bert_align.py

# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION.  All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Finetuning the library models for sequence classification on GLUE (Bert, XLM, XLNet, RoBERTa)."""

from __future__ import absolute_import, division, print_function

import argparse
import glob
import logging
import os
import random
import time

import numpy as np
import torch
from torch.utils.data import (DataLoader, RandomSampler, SequentialSampler,
                              TensorDataset)
from torch.utils.tensorboard import SummaryWriter
#from tensorboardX import SummaryWriter
from sklearn import metrics
from tqdm import tqdm, trange

from file_utils import WEIGHTS_NAME
from configuration_bert import BertConfig
from modeling_bert_align import BertForSequenceClassification
from tokenization_bert import BertTokenizer

from optimization import AdamW, WarmupLinearSchedule

from metrics import glue_compute_metrics as compute_metrics
from processors.glue_align import glue_output_modes as output_modes
from processors.glue_align import glue_processors as processors
from processors.glue_align import glue_convert_examples_to_features as convert_examples_to_features

logger = logging.getLogger(__name__)

def set_seed(args):
    random.seed(args.seed)
    np.random.seed(args.seed)
    torch.manual_seed(args.seed)
    if args.n_gpu > 0:
        torch.cuda.manual_seed_all(args.seed)


def train(args, train_dataset, model, tokenizer):
    """ Train the model """
    tb_writer = SummaryWriter("./runs2/bert_align/")

    args.train_batch_size = args.per_gpu_train_batch_size * max(1, args.n_gpu)
    train_sampler = RandomSampler(train_dataset)
    train_dataloader = DataLoader(train_dataset, sampler=train_sampler, batch_size=args.train_batch_size)

    if args.max_steps > 0:
        t_total = args.max_steps
        args.num_train_epochs = args.max_steps // (len(train_dataloader) // args.gradient_accumulation_steps) + 1
    else:
        t_total = len(train_dataloader) // args.gradient_accumulation_steps * args.num_train_epochs

    warm_up_steps = int(args.warmup_steps * t_total)
    save_steps=int(args.save_steps*t_total)
    # Prepare optimizer and schedule (linear warmup and decay)
    no_decay = ['bias', 'LayerNorm.weight']
    a = []
    b = []
    c = []
    d = []
    optimizer_grouped_parameters = []
    for n, p in model.named_parameters():
        if 'classifier' in n or 'linear_r' in n or 'linear_g' in n:
            if any(nd in n for nd in no_decay):
                a.append(p)
            else:
                b.append(p)
        else:
            if any(nd in n for nd in no_decay):
                c.append(p)
            else:
                d.append(p)
    optimizer_grouped_parameters.append({"params": a, "weight_decay": 0, "lr": 2e-3})
    optimizer_grouped_parameters.append({"params": b, "weight_decay": args.weight_decay, "lr": 2e-3})
    optimizer_grouped_parameters.append({"params": c, "weight_decay": 0})
    optimizer_grouped_parameters.append({"params": d, "weight_decay": args.weight_decay})
    optimizer = AdamW(optimizer_grouped_parameters, lr=args.learning_rate, eps=args.adam_epsilon)
    scheduler = WarmupLinearSchedule(optimizer, warmup_steps=warm_up_steps, t_total=t_total)

    # multi-gpu training (should be after apex fp16 initialization)
    if args.n_gpu > 1:
        model = torch.nn.DataParallel(model)

    # Train!
    logger.info("***** Running training *****")
    logger.info("  Num examples = %d", len(train_dataset))
    logger.info("  Num Epochs = %d", args.num_train_epochs)
    logger.info("  Instantaneous batch size per GPU = %d", args.per_gpu_train_batch_size)
    logger.info("  Total train batch size (w. parallel, distributed & accumulation) = %d",args.train_batch_size * args.gradient_accumulation_steps)
    logger.info("  Gradient Accumulation steps = %d", args.gradient_accumulation_steps)
    logger.info("  Total optimization steps = %d", t_total)

    global_step = 0
    tr_loss, logging_loss = 0.0, 0.0
    model.zero_grad()
    train_iterator = trange(int(args.num_train_epochs), desc="Epoch")
    set_seed(args)  # Added here for reproductibility (even between python 2 and 3)
    for _ in train_iterator:
        epoch_iterator = tqdm(train_dataloader, desc="Iteration")
        for step, batch in enumerate(epoch_iterator):
            model.train()
            batch = tuple(t.to(args.device) for t in batch)
            inputs = {'input_ids':      batch[0],
                      'attention_mask': batch[1],
                      'align_mask': batch[2],
                      'labels':         batch[4]}
            inputs['token_type_ids'] = batch[3]
            outputs = model(**inputs)
            loss = outputs[0]  # model outputs are always tuple in transformers (see doc)

            if args.n_gpu > 1:
                loss = loss.mean()  # mean() to average on multi-gpu parallel training
            if args.gradient_accumulation_steps > 1:
                loss = loss / args.gradient_accumulation_steps

            loss.backward()

            tr_loss += loss.item()
            if (step + 1) % args.gradient_accumulation_steps == 0:
                torch.nn.utils.clip_grad_norm_(model.parameters(), args.max_grad_norm)
                optimizer.step()
                scheduler.step()  # Update learning rate schedule
                model.zero_grad()
                global_step += 1

                if args.logging_steps > 0 and global_step % args.logging_steps == 0:
                    # Log metrics
                    tb_writer.add_scalar('lr_n', scheduler.get_lr()[0], global_step)
                    tb_writer.add_scalar('lr_o', scheduler.get_lr()[2], global_step)
                    tb_writer.add_scalar('loss', (tr_loss - logging_loss) / args.logging_steps, global_step)
                    logging_loss = tr_loss

                if save_steps > 0 and global_step % save_steps == 0:
                    # Save model checkpoint
                    if args.evaluate_during_training:  # Only evaluate when single GPU otherwise metrics may not average well
                        results = evaluate(args, model, tokenizer)
                        for key, value in results.items():
                            tb_writer.add_scalar('eval_{}'.format(key), value, global_step)
                    output_dir = os.path.join(args.output_dir, 'checkpoint-{}'.format(global_step))
                    if not os.path.exists(output_dir):
                        os.makedirs(output_dir)
                    model_to_save = model.module if hasattr(model,
                                                            'module') else model  # Take care of distributed/parallel training
                    model_to_save.save_pretrained(output_dir)
                    torch.save(args, os.path.join(output_dir, 'training_args.bin'))
                    logger.info("Saving model checkpoint to %s", output_dir)

            if args.max_steps > 0 and global_step > args.max_steps:
                epoch_iterator.close()
                break
        if args.max_steps > 0 and global_step > args.max_steps:
            train_iterator.close()
            break
    tb_writer.close()

    return global_step, tr_loss / global_step


def evaluate(args, model, tokenizer, prefix=""):
    # Loop to handle MNLI double evaluation (matched, mis-matched)
    eval_task_names = ("mnli", "mnli-mm") if args.task_name == "mnli" else (args.task_name,)
    eval_outputs_dirs = (args.output_dir, args.output_dir + '-MM') if args.task_name == "mnli" else (args.output_dir,)

    results = {}
    for eval_task, eval_output_dir in zip(eval_task_names, eval_outputs_dirs):
        eval_dataset = load_and_cache_examples(args, eval_task, tokenizer, evaluate=True)

        if not os.path.exists(eval_output_dir):
            os.makedirs(eval_output_dir)

        args.eval_batch_size = args.per_gpu_eval_batch_size * max(1, args.n_gpu)
        # Note that DistributedSampler samples randomly
        eval_sampler = SequentialSampler(eval_dataset)
        eval_dataloader = DataLoader(eval_dataset, sampler=eval_sampler, batch_size=args.eval_batch_size)

        # Eval!
        logger.info("***** Running evaluation {} *****".format(prefix))
        logger.info("  Num examples = %d", len(eval_dataset))
        logger.info("  Batch size = %d", args.eval_batch_size)
        eval_loss = 0.0
        nb_eval_steps = 0
        preds = None
        out_label_ids = None
        start_time=time.clock()
        for batch in tqdm(eval_dataloader, desc="Evaluating"):
            model.eval()
            batch = tuple(t.to(args.device) for t in batch)

            with torch.no_grad():
                inputs = {'input_ids': batch[0],
                          'attention_mask': batch[1],
                          'align_mask': batch[2],
                          'labels': batch[4]}
                inputs['token_type_ids'] = batch[3]
                outputs = model(**inputs)
                tmp_eval_loss, logits = outputs[:2]

                eval_loss += tmp_eval_loss.mean().item()
            nb_eval_steps += 1
            if preds is None:
                preds = logits.detach().cpu().numpy()
                out_label_ids = inputs['labels'].detach().cpu().numpy()
            else:
                preds = np.append(preds, logits.detach().cpu().numpy(), axis=0)
                out_label_ids = np.append(out_label_ids, inputs['labels'].detach().cpu().numpy(), axis=0)
        print("bert_align inference time %s" % str(time.clock() - start_time))

        eval_loss = eval_loss / nb_eval_steps
        if args.output_mode == "classification":
            preds = np.argmax(preds, axis=1)
        elif args.output_mode == "regression":
            preds = np.squeeze(preds)
        result = compute_metrics(eval_task, preds, out_label_ids)
        results.update(result)
        results.update({"loss": eval_loss})

        output_eval_file = os.path.join(eval_output_dir, prefix, "eval_results.txt")
        with open(output_eval_file, "w") as writer:
            logger.info("***** Eval results {} *****".format(prefix))
            for key in sorted(result.keys()):
                logger.info("  %s = %s", key, str(result[key]))
                writer.write("%s = %s\n" % (key, str(result[key])))

    return results


def load_and_cache_examples(args, task, tokenizer, evaluate=False):

    processor = processors[task]()
    output_mode = output_modes[task]
    # Load data features from cache or dataset file
    cached_features_file = os.path.join(args.data_dir, 'cached_{}_bert_{}_{}_align_last'.format(
        'dev' if evaluate else 'train',
        str(args.max_seq_length),
        str(task)))
    if os.path.exists(cached_features_file):
        logger.info("Loading features from cached file %s", cached_features_file)
        features = torch.load(cached_features_file)
    else:
        logger.info("Creating features from dataset file at %s", args.data_dir)
        label_list = processor.get_labels()
        examples = processor.get_dev_examples2(args.data_dir) if evaluate else processor.get_train_examples(
            args.data_dir)
        features = convert_examples_to_features(examples,
                                                tokenizer,
                                                label_list=label_list,
                                                max_length=args.max_seq_length,
                                                output_mode=output_mode,
                                                pad_on_left=False,
                                                # pad on the left for xlnet
                                                pad_token=tokenizer.convert_tokens_to_ids([tokenizer.pad_token])[0],
                                                pad_token_segment_id=0,
                                                )
        logger.info("Saving features into cached file %s", cached_features_file)
        torch.save(features, cached_features_file)

    # Convert to Tensors and build dataset
    all_input_ids = torch.tensor([f.input_ids for f in features], dtype=torch.long)
    all_attention_mask = torch.tensor([f.attention_mask for f in features], dtype=torch.long)
    all_align_mask = torch.tensor([f.align_mask for f in features], dtype=torch.long)
    all_token_type_ids = torch.tensor([f.token_type_ids for f in features], dtype=torch.long)
    if output_mode == "classification":
        all_labels = torch.tensor([f.label for f in features], dtype=torch.long)
    elif output_mode == "regression":
        all_labels = torch.tensor([f.label for f in features], dtype=torch.float)

    dataset = TensorDataset(all_input_ids, all_attention_mask,all_align_mask,all_token_type_ids, all_labels)
    return dataset


def main():
    parser = argparse.ArgumentParser()

    ## Required parameters
    parser.add_argument("--data_dir", default="data", type=str,
                        help="The input data dir. Should contain the .tsv files (or other data files) for the task.")
    parser.add_argument("--task_name", default="mytask", type=str,
                        help="The name of the task to train selected in the list: " + ", ".join(processors.keys()))
    parser.add_argument("--output_dir", default="bert_align2", type=str,
                        help="The output directory where the model predictions and checkpoints will be written.")

    ## Other parameters
    parser.add_argument("--max_seq_length", default=64, type=int,
                        help="The maximum total input sequence length after tokenization. Sequences longer "
                             "than this will be truncated, sequences shorter will be padded.")
    parser.add_argument("--do_train", default=False,
                        help="Whether to run training.")
    parser.add_argument("--do_eval", default=True,
                        help="Whether to run eval on the dev set.")
    parser.add_argument("--evaluate_during_training", default=False,
                        help="Rul evaluation during training at each logging step.")
    parser.add_argument("--do_lower_case", action='store_true',
                        help="Set this flag if you are using an uncased model.")

    parser.add_argument("--per_gpu_train_batch_size", default=16, type=int,
                        help="Batch size per GPU/CPU for training.")
    parser.add_argument("--per_gpu_eval_batch_size", default=24, type=int,
                        help="Batch size per GPU/CPU for evaluation.")
    parser.add_argument('--gradient_accumulation_steps', type=int, default=1,
                        help="Number of updates steps to accumulate before performing a backward/update pass.")
    parser.add_argument("--learning_rate", default=2e-5, type=float,
                        help="The initial learning rate for Adam.")
    parser.add_argument("--weight_decay", default=0.01, type=float,
                        help="Weight deay if we apply some.")
    parser.add_argument("--adam_epsilon", default=1e-6, type=float,
                        help="Epsilon for Adam optimizer.")
    parser.add_argument("--max_grad_norm", default=1.0, type=float,
                        help="Max gradient norm.")
    parser.add_argument("--num_train_epochs", default=4.0, type=float,
                        help="Total number of training epochs to perform.")
    parser.add_argument("--max_steps", default=-1, type=int,
                        help="If > 0: set total number of training steps to perform. Override num_train_epochs.")
    parser.add_argument("--warmup_steps", default=0.1, type=float,
                        help="Linear warmup over warmup_steps.")

    parser.add_argument('--logging_steps', type=int, default=25,
                        help="Log every X updates steps.")
    parser.add_argument('--save_steps', type=float, default=0.05,
                        help="Save checkpoint every X updates steps.")
    parser.add_argument("--eval_all_checkpoints", action='store_true',
                        help="Evaluate all checkpoints starting with the same prefix as model_name ending and ending with step number")
    parser.add_argument('--overwrite_output_dir', default=True,
                        help="Overwrite the content of the output directory")
    parser.add_argument('--seed', type=int, default=42,
                        help="random seed for initialization")
    args = parser.parse_args()

    if os.path.exists(args.output_dir) and os.listdir(
            args.output_dir) and args.do_train and not args.overwrite_output_dir:
        raise ValueError(
            "Output directory ({}) already exists and is not empty. Use --overwrite_output_dir to overcome.".format(
                args.output_dir))

    # Setup CUDA, GPU & distributed training
    device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
    args.n_gpu = torch.cuda.device_count()
    args.device = device

    # Setup logging
    logging.basicConfig(format = '%(asctime)s - %(levelname)s - %(name)s -   %(message)s',
                        datefmt = '%m/%d/%Y %H:%M:%S',
                        level = logging.INFO)
    logger.warning("device: %s, n_gpu: %s",device, args.n_gpu)

    # Set seed
    set_seed(args)

    # Prepare GLUE task
    args.task_name = args.task_name.lower()
    if args.task_name not in processors:
        raise ValueError("Task not found: %s" % (args.task_name))
    processor = processors[args.task_name]()
    args.output_mode = output_modes[args.task_name]
    label_list = processor.get_labels()
    num_labels = len(label_list)

    # Load pretrained model and tokenizer
    config_class, model_class, tokenizer_class = BertConfig, BertForSequenceClassification, BertTokenizer
    config = config_class.from_pretrained("./pretrained/bertbase/config.json",num_labels=num_labels,finetuning_task=args.task_name)
    tokenizer = tokenizer_class.from_pretrained("./pretrained/bertbase/")
    model = model_class.from_pretrained("./pretrained/bertbase/bert-base-uncased-pytorch_model.bin", from_tf=False,
                                        config=config)
    model.to(args.device)

    logger.info("Training/evaluation parameters %s", args)

    # Training
    if args.do_train:
        train_dataset = load_and_cache_examples(args, args.task_name, tokenizer, evaluate=False)
        global_step, tr_loss = train(args, train_dataset, model, tokenizer)
        logger.info(" global_step = %s, average loss = %s", global_step, tr_loss)

    # Saving best-practices: if you use defaults names for the model, you can reload it using from_pretrained()
    if args.do_train:
        # Create output directory if needed
        if not os.path.exists(args.output_dir):
            os.makedirs(args.output_dir)

        logger.info("Saving model checkpoint to %s", args.output_dir)
        # Save a trained model, configuration and tokenizer using `save_pretrained()`.
        # They can then be reloaded using `from_pretrained()`
        model_to_save = model.module if hasattr(model,
                                                'module') else model  # Take care of distributed/parallel training
        model_to_save.save_pretrained(args.output_dir)
        tokenizer.save_pretrained(args.output_dir)

        # Good practice: save your training arguments together with the trained model
        torch.save(args, os.path.join(args.output_dir, 'training_args.bin'))

        # Load a trained model and vocabulary that you have fine-tuned
        model = model_class.from_pretrained(args.output_dir)
        tokenizer = tokenizer_class.from_pretrained(args.output_dir, do_lower_case=args.do_lower_case)
        model.to(args.device)

    # Evaluation
    results = {}
    if args.do_eval:
        tokenizer = tokenizer_class.from_pretrained(args.output_dir, do_lower_case=args.do_lower_case)
        checkpoints = [args.output_dir]
        if args.eval_all_checkpoints:
            checkpoints = list(
                os.path.dirname(c) for c in sorted(glob.glob(args.output_dir + '/**/' + WEIGHTS_NAME, recursive=True)))
            logging.getLogger("transformers.modeling_utils").setLevel(logging.WARN)  # Reduce logging
        logger.info("Evaluate the following checkpoints: %s", checkpoints)
        for checkpoint in checkpoints:
            global_step = checkpoint.split('-')[-1] if len(checkpoints) > 1 else ""
            prefix = checkpoint.split('/')[-1] if checkpoint.find('checkpoint') != -1 else ""

            model = model_class.from_pretrained(checkpoint)
            model.to(args.device)
            result = evaluate(args, model, tokenizer, prefix=prefix)
            result = dict((k + '_{}'.format(global_step), v) for k, v in result.items())
            results.update(result)

    return results


if __name__ == "__main__":
    main()