You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Update:
While I could run the singularity program, once I add "ct: true", following are the error messages I receive:
invalid field ct, expected one of: 'alpha', 'beta', 'dp', 'edge_mutation', 'edit_fraction',
'fwd_is_reverse', 'input_bam', 'junction_overhang', 'keep_all_edited', 'known_snp', 'min_variant_coverage', 'non_ag',
'reference', 'rev_is_reverse', 'reverse_stranded_library', 'single_end', 'skip_duplicate_removal'
Please do let me know how to incorporate the ct flag.
(can ignore: "I have tried using the cwl based method to run the example data, but I ran into quite a bit of errors (possibly owing to conflicts arising from Python 2.7 and 3.8, I think). Thus, I would much appreciate if there can be an explanation for using Sailor (1.2.0 ?) using bash.")
Thanks!
The text was updated successfully, but these errors were encountered:
BohBio
changed the title
Usage with bash (for beginner)
Error encountered with "ct: true" while using the 1.0.4 singularity.
Jul 14, 2022
Update:
While I could run the singularity program, once I add "ct: true", following are the error messages I receive:
invalid field
ct
, expected one of: 'alpha', 'beta', 'dp', 'edge_mutation', 'edit_fraction','fwd_is_reverse', 'input_bam', 'junction_overhang', 'keep_all_edited', 'known_snp', 'min_variant_coverage', 'non_ag',
'reference', 'rev_is_reverse', 'reverse_stranded_library', 'single_end', 'skip_duplicate_removal'
Please do let me know how to incorporate the ct flag.
(can ignore: "I have tried using the cwl based method to run the example data, but I ran into quite a bit of errors (possibly owing to conflicts arising from Python 2.7 and 3.8, I think). Thus, I would much appreciate if there can be an explanation for using Sailor (1.2.0 ?) using bash.")
Thanks!
The text was updated successfully, but these errors were encountered: