Download problem

[Witiy]

Hi, I think there is a error with download link.
https://s3-us-west-1.amazonaws.com/sailor-1.0.4/sailor-1.0.4
please check it.

Thanks !

[joegeorgeson]

Any update on this?

[byee4]

Hi, sorry about that. Here is a link to the SAILOR image used in the Deffit et al. paper<https://urldefense.com/v3/__https:/www.ncbi.nlm.nih.gov/pmc/articles/PMC5644944/__;!!LLK065n_VXAQ!llwqSzGFaYfhSqmiU1LdtTsLYibz84KK6KGS1W7BKfgxid1YZ6HmwckQqTX8f3fpUOInn23-FyHFQTgyNOm3AtyvYw$>. This image should call A-I edits with some code to call C-T if applicable: https://external-collaborator-data.s3.us-west-1.amazonaws.com/public-software/sailor.tar.gz<https://urldefense.com/v3/__https:/external-collaborator-data.s3.us-west-1.amazonaws.com/public-software/sailor.tar.gz__;!!LLK065n_VXAQ!llwqSzGFaYfhSqmiU1LdtTsLYibz84KK6KGS1W7BKfgxid1YZ6HmwckQqTX8f3fpUOInn23-FyHFQTgyNOnoPfvrNw$> However, we no longer maintain this repository and have since re-written the SAILOR workflow in Snakemake format. You can refer to the workflows that we have provided in this repo instead. The SAILOR workflows will be similar, but the FLARE repository will contain additional STAMP specific workflows that we did not consider in 2017: https://github.com/yeolab/flare<https://urldefense.com/v3/__https:/github.com/yeolab/flare__;!!LLK065n_VXAQ!llwqSzGFaYfhSqmiU1LdtTsLYibz84KK6KGS1W7BKfgxid1YZ6HmwckQqTX8f3fpUOInn23-FyHFQTgyNOn3Wc8yQQ$> I’ll update the github page with the new link shortly. SECURE: MESSAGE FROM JoeG ON 2/28/23, 4:50 AM Any update on this? — Reply to this email directly, view it on GitHub<https://urldefense.com/v3/__https:/github.com/YeoLab/sailor/issues/15*issuecomment-1448125043__;Iw!!LLK065n_VXAQ!irbKqTTDXZ4_4Q8c3dYjMg6FneTEwKix9Tnb7QQSvnI8wsbTkzK5SQIRBdggsoUs2UvED7r4TOzyfpBxD-3o5VeVHeHg$>, or unsubscribe<https://urldefense.com/v3/__https:/github.com/notifications/unsubscribe-auth/AB7TJP6B25ND4JEX7IB44XLWZXYB5ANCNFSM6AAAAAAUVGVG5A__;!!LLK065n_VXAQ!irbKqTTDXZ4_4Q8c3dYjMg6FneTEwKix9Tnb7QQSvnI8wsbTkzK5SQIRBdggsoUs2UvED7r4TOzyfpBxD-3o5fSh4U3f$>. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[joegeorgeson]

Thank you for the fast reply! I was able to download from; https://external-collaborator-data.s3.us-west-1.amazonaws.com/public-software/sailor.tar.gz

Can you confirm if this is the same image as that used in Robust single-cell discovery of RNA targets of RNA-binding proteins and ribosomes - there they cite 'SAILOR (v1.1.0)' so I guess I'm after this version (what is provided in the link is v1.2.0). Perhaps you can clarify any major differences if there any?

Thanks again.

[byee4]

Hi Joe, you should be able to use this image for C-T edits. For STAMP specifically, there may be a number of additional filters that are provided in the FLARE repository linked above SECURE: MESSAGE FROM JoeG ON 2/28/23, 10:41 AM Thank you for the fast reply! I was able to download from; https://external-collaborator-data.s3.us-west-1.amazonaws.com/public-software/sailor.tar.gz<https://urldefense.com/v3/__https:/external-collaborator-data.s3.us-west-1.amazonaws.com/public-software/sailor.tar.gz__;!!LLK065n_VXAQ!kjmvPQQmgmYgl9Z3Mf8E22zwfzmSllOmq3lmfNFDvT840hDitTjl1I1cfnLTnXOwFnBhUiEenGOLRB1GIpRxrpGQmKFE$> Can you confirm if this is the same image as that used in Robust single-cell discovery of RNA targets of RNA-binding proteins and ribosomes<https://urldefense.com/v3/__https:/www.nature.com/articles/s41592-021-01128-0__;!!LLK065n_VXAQ!kjmvPQQmgmYgl9Z3Mf8E22zwfzmSllOmq3lmfNFDvT840hDitTjl1I1cfnLTnXOwFnBhUiEenGOLRB1GIpRxrqfkSc0M$> — Reply to this email directly, view it on GitHub<https://urldefense.com/v3/__https:/github.com/YeoLab/sailor/issues/15*issuecomment-1448671771__;Iw!!LLK065n_VXAQ!kjmvPQQmgmYgl9Z3Mf8E22zwfzmSllOmq3lmfNFDvT840hDitTjl1I1cfnLTnXOwFnBhUiEenGOLRB1GIpRxrlBISezj$>, or unsubscribe<https://urldefense.com/v3/__https:/github.com/notifications/unsubscribe-auth/AB7TJPZ3K6MROXNGNIG5RNDWZZAKXANCNFSM6AAAAAAUVGVG5A__;!!LLK065n_VXAQ!kjmvPQQmgmYgl9Z3Mf8E22zwfzmSllOmq3lmfNFDvT840hDitTjl1I1cfnLTnXOwFnBhUiEenGOLRB1GIpRxrrslRoVs$>. You are receiving this because you commented.Message ID: ***@***.***>