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metaseqR2.build #56

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Yikun opened this issue Mar 7, 2023 · 4 comments
Open

metaseqR2.build #56

Yikun opened this issue Mar 7, 2023 · 4 comments
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BUILD PRIO_1 TIMEOUT UPSTREAM REPORTED

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@Yikun
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Yikun commented Mar 7, 2023

https://yikun.github.io/bioconductor-0301/report/metaseqR2/kunpeng1-buildsrc.html
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martin-g commented Mar 8, 2023

The error is: sh: 1: /tmp/Rtmp5jSbBD/test_custom/genePredToGtf: Exec format error

@martin-g martin-g self-assigned this Mar 9, 2023
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martin-g commented Mar 9, 2023 •
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I've asked for aarch64 binary at https://groups.google.com/a/soe.ucsc.edu/g/genome/c/_wx0SJPBXok?hl=en

The Github repo is https://github.com/ucscGenomeBrowser/kent

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Reported upstream - ucscGenomeBrowser/kent#75

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The problem with genePredToGtf has been solved by building it locally and setting it in the classpath - pmoulos/metaseqR2#16
The build and checks fully pass when executed manually but timeout when executed with the daily report.

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