readme.md

predicting auxilin spikes in clathrin-mediated endocytosis

quickstart for making new predictions

• our fully trained model is available in the models folder

reproducibility

• download data: download cached data after tracking from this gdrive folder - should be added to the folder data/tracks
• process data: run python data.py to properly preprocess all the data (will cache it into the "processed folder")
• rerun analysis: notebooks folder contains step-by-step analysis
• tests: run tests with pytest in the tests folder

acknowledgements

• this is a collaboration between the Berkeley Yu-Group and the Berkeley Advanced Bioimaging Center
• uses code from several wonderful packages including cmeAnalysis (DanuserLab)