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DESCRIPTION
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DESCRIPTION
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Package: DiffSegR
Type: Package
Title: DiffSegR: An RNA-Seq Data Driven Method for Differential Expression Analysis using Changepoint Detection
Version: 2.0
Authors@R:
c(person(given = "Arnaud",
family = "Liehrmann",
role = c("aut", "cre"),
email = "arnaud.liehrmann@universite-paris-saclay.fr"),
person(given = "Étienne",
family = "Delannoy",
role = c("aut")),
person(given = "Benoît",
family = "Castandet",
role = c("aut")),
person(given = "Guillem",
family = "Rigaill",
role = c("aut"))
)
Description: The DiffSegR R package takes the bam files from an RNA-Seq dataset with two biological conditions and returns transcriptome-wide expression differences between these two conditions without using pre-existing annotations (typically genes).
URL: https://github.com/aLiehrmann/DiffSegR
BugReports: https://github.com/aLiehrmann/DiffSegR/issues
License: GPL-3
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
Imports:
ggplot2,
sanssouci,
IRanges,
parallel,
GenomicRanges,
matrixStats,
xml2,
DESeq2,
GenomeInfoDb,
Rsubread,
S4Vectors,
SummarizedExperiment,
fpopw,
methods,
rtracklayer,
BiocGenerics,
stats,
Rsamtools,
grDevices,
GenomicAlignments
Depends:
R (>= 3.5)
Suggests:
rmarkdown,
knitr
VignetteBuilder: knitr