index.rst

GUNC

GTDB R95 reference DB

Note: The following methods have source data that is not publicly available:

.. autofunction:: magna.gunc.gunc_max_css_scores_gtdb_r95

.. autofunction:: magna.gunc.gunc_contig_assignment_gtdb_r95

.. autofunction:: magna.gunc.gunc_all_levels_gtdb_r95

Progenes reference DB

.. autoclass:: magna.gunc.GuncMaxCssScores
    :members:

.. autoclass:: magna.gunc.GuncAllScores
    :members:

Helper functions

.. autofunction:: magna.gunc.read_contig_assignments_tsv