In step 4 - Analysis Parameters - the analysis settings for your images can be specified and saved. As always, the analysis parameters are grouped in templates. A parameter template can be reused in future deconvolution and analysis jobs. This will be useful when the same type of analysis has to be performed on other images. Moreover, the parameter templates can be shared among HRM users, fostering collaboration and re-usage of good analysis settings.
The following selections are possible at this stage:
- Admin analysis templates: parameter templates created by the HRM administrator to be used as references. They can be copied and edited by the HRM users. In order to use them, they first need to be copied to Your analysis templates by using .
- Your analysis templates: the analysis templates that the user can use directly. All templates in this area may be selected, edited, removed, etc.
Note
show tooltips stating their action w.r.t templates. Namely, create, edit, clone, share, mark as favourite and delete.
An analysis parameter template consists of a number of options that provide Huygens Core with information about the type of analysis to execute on the images. To get a preview of the template contents select the template, the contents will be displayed on the right panel.
Note
When editing a template help links are displayed at key locations to point you to specific articles of the SVI-wiki.
The following parameters can be edited in a template.
step4_colocalization step4_channels step4_coloccoefficients step4_threshold step4_colocmaps