Merging Hyperspy bug-fix

[CSSFrancis]

@jacobjma I was wondering if there is any thing blocking the merging of the commits in the abtem-dask branch. Specifically there are some bugfixes related to the hyperspy integration.

It would be good to include some of those changes into a hyperspy-bundle in the next week or so.

[jacobjma]

Can you link to exactly what you are referencing? abtem-dask is merged with main, so the branch is deprecated.

I just tested, and there was an issue with the hyperspy integration, which I fixed. See this very recent commit.

abTEM only has the most basic testing for HyperSpy integration; see here, which allows things like this to happen. I should improve this.

[CSSFrancis]

Can you link to exactly what you are referencing? abtem-dask is merged with main, so the branch is deprecated.

I just tested, and there was an issue with the hyperspy integration, which I fixed. See this very recent commit.

That should fix the issue! The problem is with the underlying dask array and hyperspy axes not agreeing. I think that was fixed in 15b8a38 but that was never merged into the main repo.

abTEM only has the most basic testing for HyperSpy integration; see here, which allows things like this to happen. I should improve this.

I'll make a PR a little later this week to test the HyperSpy integration a little bit more so don't worry about it too much. I've been meaning to add some additional tutorials: https://github.com/CSSFrancis/abtem-pyxem/blob/main/AbTEMPyxem.ipynb to abTEM as well if you think something like this might be useful.

[jacobjma]

This should be fixed.