Compilation error ExaBayes 1.5.1

[uriborrajo]

I am struggling to compile ExaBayes version 1.5.1 on my Ubuntu workstation.

I have the following installed:

gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
Ubuntu clang version 14.0.0-1ubuntu1.1
mpirun (Open MPI) 4.1.2

ERROR:

CXX src/apps/yggdrasil-exabayes.o
In file included from ./src/comm/LocalComm.hpp:10,
from ./src/comm/Communicator.hpp:5,
from ./src/comm/ParallelSetup.hpp:8,
from ./src/mcmc/SampleMaster.hpp:20,
from ./src/apps/exabayes.cpp:29:
./src/comm/threads/MessageQueue.hpp:56:24: error: template argument 1 is invalid
56 | Node(std::vector msg, std::vector whoReads );
| ^
./src/comm/threads/MessageQueue.hpp:56:24: error: template argument 2 is invalid
./src/comm/threads/MessageQueue.hpp:61:35: error: template argument 1 is invalid
61 | std::tuple<int, std::vector > getConsumed(int threadId);
| ^
./src/comm/threads/MessageQueue.hpp:61:35: error: template argument 2 is invalid
./src/comm/threads/MessageQueue.hpp:61:37: error: template argument 2 is invalid
61 | std::tuple<int, std::vector > getConsumed(int threadId);
| ^
./src/comm/threads/MessageQueue.hpp:64:19: error: template argument 1 is invalid
64 | std::vector _message;
| ^
./src/comm/threads/MessageQueue.hpp:64:19: error: template argument 2 is invalid
In file included from ./src/comm/threads/MessageQueue.hpp:71,
from ./src/comm/LocalComm.hpp:10,
from ./src/comm/Communicator.hpp:5,
from ./src/comm/ParallelSetup.hpp:8,
from ./src/mcmc/SampleMaster.hpp:20,
from ./src/apps/exabayes.cpp:29:
./src/comm/threads/MessageQueue.tpp: In member function ‘void MessageQueue::produce(std::vector, const std::vector&)’:
./src/comm/threads/MessageQueue.tpp:15:33: error: template argument 1 is invalid
15 | auto tmpMsg = std::vector(reinterpret_cast<byte*>(msg.data()), reinterpret_cast<byte*>(msg.data() + msg.size()));
| ^
./src/comm/threads/MessageQueue.tpp:15:33: error: template argument 2 is invalid
./src/comm/threads/MessageQueue.tpp:15:52: error: reference to ‘byte’ is ambiguous
15 | auto tmpMsg = std::vector(reinterpret_cast<byte*>(msg.data()), reinterpret_cast<byte*>(msg.data() + msg.size()));
| ^~~~
In file included from /usr/include/c++/11/bits/stl_algobase.h:61,
from /usr/include/c++/11/bits/char_traits.h:39,
from /usr/include/c++/11/ios:40,
from /usr/include/c++/11/ostream:38,
from /usr/include/c++/11/iostream:39,
from ./src/apps/exabayes.cpp:22:
/usr/include/c++/11/bits/cpp_type_traits.h:404:30: note: candidates are: ‘enum class std::byte’
404 | enum class byte : unsigned char;
| ^~~~
In file included from ./src/comm/LocalComm.hpp:10,
from ./src/comm/Communicator.hpp:5,
from ./src/comm/ParallelSetup.hpp:8,
from ./src/mcmc/SampleMaster.hpp:20,
from ./src/apps/exabayes.cpp:29:
./src/comm/threads/MessageQueue.hpp:24:17: note: ‘typedef uint8_t byte’
24 | typedef uint8_t byte;
| ^~~~
In file included from ./src/comm/threads/MessageQueue.hpp:71,
from ./src/comm/LocalComm.hpp:10,
from ./src/comm/Communicator.hpp:5,
from ./src/comm/ParallelSetup.hpp:8,
from ./src/mcmc/SampleMaster.hpp:20,
from ./src/apps/exabayes.cpp:29:
./src/comm/threads/MessageQueue.tpp:15:56: error: expected ‘>’ before ‘’ token
15 | auto tmpMsg = std::vector(reinterpret_cast<byte>(msg.data()), reinterpret_cast<byte*>(msg.data() + msg.size()));
| ^
./src/comm/threads/MessageQueue.tpp:15:56: error: expected ‘(’ before ‘’ token
15 | auto tmpMsg = std::vector(reinterpret_cast<byte>(msg.data()), reinterpret_cast<byte*>(msg.data() + msg.size()));
| ^
| (
./src/comm/threads/MessageQueue.tpp:15:57: error: expected primary-expression before ‘>’ token
15 | auto tmpMsg = std::vector(reinterpret_cast<byte*>(msg.data()), reinterpret_cast<byte*>(msg.data() + msg.size()));
| ^
./src/comm/threads/MessageQueue.tpp:15:89: error: reference to ‘byte’ is ambiguous
15 | auto tmpMsg = std::vector(reinterpret_cast<byte*>(msg.data()), reinterpret_cast<byte*>(msg.data() + msg.size()));
| ^~~~
In file included from /usr/include/c++/11/bits/stl_algobase.h:61,
from /usr/include/c++/11/bits/char_traits.h:39,
from /usr/include/c++/11/ios:40,
from /usr/include/c++/11/ostream:38,
from /usr/include/c++/11/iostream:39,
from ./src/apps/exabayes.cpp:22:
/usr/include/c++/11/bits/cpp_type_traits.h:404:30: note: candidates are: ‘enum class std::byte’
404 | enum class byte : unsigned char;
| ^~~~
In file included from ./src/comm/LocalComm.hpp:10,
from ./src/comm/Communicator.hpp:5,
from ./src/comm/ParallelSetup.hpp:8,
from ./src/mcmc/SampleMaster.hpp:20,
from ./src/apps/exabayes.cpp:29:
./src/comm/threads/MessageQueue.hpp:24:17: note: ‘typedef uint8_t byte’
24 | typedef uint8_t byte;
| ^~~~
In file included from ./src/comm/threads/MessageQueue.hpp:71,
from ./src/comm/LocalComm.hpp:10,
from ./src/comm/Communicator.hpp:5,
from ./src/comm/ParallelSetup.hpp:8,
from ./src/mcmc/SampleMaster.hpp:20,
from ./src/apps/exabayes.cpp:29:
./src/comm/threads/MessageQueue.tpp:15:93: error: expected ‘>’ before ‘’ token
15 | auto tmpMsg = std::vector(reinterpret_cast<byte>(msg.data()), reinterpret_cast<byte*>(msg.data() + msg.size()));
| ^
./src/comm/threads/MessageQueue.tpp:15:93: error: expected ‘(’ before ‘’ token
15 | auto tmpMsg = std::vector(reinterpret_cast<byte>(msg.data()), reinterpret_cast<byte*>(msg.data() + msg.size()));
| ^
| (
./src/comm/threads/MessageQueue.tpp:15:94: error: expected primary-expression before ‘>’ token
15 | auto tmpMsg = std::vector(reinterpret_cast<byte*>(msg.data()), reinterpret_cast<byte*>(msg.data() + msg.size()));
| ^
./src/comm/threads/MessageQueue.tpp:15:121: error: expected ‘)’ before ‘;’ token
15 | auto tmpMsg = std::vector(reinterpret_cast<byte*>(msg.data()), reinterpret_cast<byte*>(msg.data() + msg.size()));
| ^
| )
./src/comm/threads/MessageQueue.tpp: In member function ‘std::tuple<bool, std::vector<T, std::allocator<_CharT> > > MessageQueue::consume(int)’:
./src/comm/threads/MessageQueue.tpp:46:39: error: template argument 1 is invalid
46 | auto msg = std::vector();
| ^
./src/comm/threads/MessageQueue.tpp:46:39: error: template argument 2 is invalid
In file included from ./src/comm/LocalComm.hpp:11,
from ./src/comm/Communicator.hpp:5,
from ./src/comm/ParallelSetup.hpp:8,
from ./src/mcmc/SampleMaster.hpp:20,
from ./src/apps/exabayes.cpp:29:
./src/comm/threads/MessageQueueSingle.hpp: At global scope:
./src/comm/threads/MessageQueueSingle.hpp:46:24: error: template argument 1 is invalid
46 | Node(std::vector msg );
| ^
./src/comm/threads/MessageQueueSingle.hpp:46:24: error: template argument 2 is invalid
./src/comm/threads/MessageQueueSingle.hpp:50:19: error: template argument 1 is invalid
50 | std::vector _message;
| ^
./src/comm/threads/MessageQueueSingle.hpp:50:19: error: template argument 2 is invalid
In file included from ./src/comm/threads/MessageQueueSingle.hpp:55,
from ./src/comm/LocalComm.hpp:11,
from ./src/comm/Communicator.hpp:5,
from ./src/comm/ParallelSetup.hpp:8,
from ./src/mcmc/SampleMaster.hpp:20,
from ./src/apps/exabayes.cpp:29:
./src/comm/threads/MessageQueueSingle.tpp: In member function ‘void MessageQueueSingle::produce(std::vector)’:
./src/comm/threads/MessageQueueSingle.tpp:15:33: error: template argument 1 is invalid
15 | auto tmpMsg = std::vector(reinterpret_cast<byte*>(msg.data()), reinterpret_cast<byte*>(msg.data() + msg.size()));
| ^
./src/comm/threads/MessageQueueSingle.tpp:15:33: error: template argument 2 is invalid
./src/comm/threads/MessageQueueSingle.tpp:15:52: error: reference to ‘byte’ is ambiguous
15 | auto tmpMsg = std::vector(reinterpret_cast<byte*>(msg.data()), reinterpret_cast<byte*>(msg.data() + msg.size()));
| ^~~~
In file included from /usr/include/c++/11/bits/stl_algobase.h:61,
from /usr/include/c++/11/bits/char_traits.h:39,
from /usr/include/c++/11/ios:40,
from /usr/include/c++/11/ostream:38,
from /usr/include/c++/11/iostream:39,
from ./src/apps/exabayes.cpp:22:
/usr/include/c++/11/bits/cpp_type_traits.h:404:30: note: candidates are: ‘enum class std::byte’
404 | enum class byte : unsigned char;
| ^~~~
In file included from ./src/comm/LocalComm.hpp:11,
from ./src/comm/Communicator.hpp:5,
from ./src/comm/ParallelSetup.hpp:8,
from ./src/mcmc/SampleMaster.hpp:20,
from ./src/apps/exabayes.cpp:29:
./src/comm/threads/MessageQueueSingle.hpp:16:17: note: ‘typedef uint8_t byte’
16 | typedef uint8_t byte;
| ^~~~
In file included from ./src/comm/threads/MessageQueueSingle.hpp:55,
from ./src/comm/LocalComm.hpp:11,
from ./src/comm/Communicator.hpp:5,
from ./src/comm/ParallelSetup.hpp:8,
from ./src/mcmc/SampleMaster.hpp:20,
from ./src/apps/exabayes.cpp:29:
./src/comm/threads/MessageQueueSingle.tpp:15:56: error: expected ‘>’ before ‘’ token
15 | auto tmpMsg = std::vector(reinterpret_cast<byte>(msg.data()), reinterpret_cast<byte*>(msg.data() + msg.size()));
| ^
./src/comm/threads/MessageQueueSingle.tpp:15:56: error: expected ‘(’ before ‘’ token
15 | auto tmpMsg = std::vector(reinterpret_cast<byte>(msg.data()), reinterpret_cast<byte*>(msg.data() + msg.size()));
| ^
| (
./src/comm/threads/MessageQueueSingle.tpp:15:57: error: expected primary-expression before ‘>’ token
15 | auto tmpMsg = std::vector(reinterpret_cast<byte*>(msg.data()), reinterpret_cast<byte*>(msg.data() + msg.size()));
| ^
./src/comm/threads/MessageQueueSingle.tpp:15:89: error: reference to ‘byte’ is ambiguous
15 | auto tmpMsg = std::vector(reinterpret_cast<byte*>(msg.data()), reinterpret_cast<byte*>(msg.data() + msg.size()));
| ^~~~
In file included from /usr/include/c++/11/bits/stl_algobase.h:61,
from /usr/include/c++/11/bits/char_traits.h:39,
from /usr/include/c++/11/ios:40,
from /usr/include/c++/11/ostream:38,
from /usr/include/c++/11/iostream:39,
from ./src/apps/exabayes.cpp:22:
/usr/include/c++/11/bits/cpp_type_traits.h:404:30: note: candidates are: ‘enum class std::byte’
404 | enum class byte : unsigned char;
| ^~~~
In file included from ./src/comm/LocalComm.hpp:11,
from ./src/comm/Communicator.hpp:5,
from ./src/comm/ParallelSetup.hpp:8,
from ./src/mcmc/SampleMaster.hpp:20,
from ./src/apps/exabayes.cpp:29:
./src/comm/threads/MessageQueueSingle.hpp:16:17: note: ‘typedef uint8_t byte’
16 | typedef uint8_t byte;
| ^~~~
In file included from ./src/comm/threads/MessageQueueSingle.hpp:55,
from ./src/comm/LocalComm.hpp:11,
from ./src/comm/Communicator.hpp:5,
from ./src/comm/ParallelSetup.hpp:8,
from ./src/mcmc/SampleMaster.hpp:20,
from ./src/apps/exabayes.cpp:29:
./src/comm/threads/MessageQueueSingle.tpp:15:93: error: expected ‘>’ before ‘’ token
15 | auto tmpMsg = std::vector(reinterpret_cast<byte>(msg.data()), reinterpret_cast<byte*>(msg.data() + msg.size()));
| ^
./src/comm/threads/MessageQueueSingle.tpp:15:93: error: expected ‘(’ before ‘’ token
15 | auto tmpMsg = std::vector(reinterpret_cast<byte>(msg.data()), reinterpret_cast<byte*>(msg.data() + msg.size()));
| ^
| (
./src/comm/threads/MessageQueueSingle.tpp:15:94: error: expected primary-expression before ‘>’ token
15 | auto tmpMsg = std::vector(reinterpret_cast<byte*>(msg.data()), reinterpret_cast<byte*>(msg.data() + msg.size()));
| ^
./src/comm/threads/MessageQueueSingle.tpp:15:121: error: expected ‘)’ before ‘;’ token
15 | auto tmpMsg = std::vector(reinterpret_cast<byte*>(msg.data()), reinterpret_cast<byte*>(msg.data() + msg.size()));
| ^
| )
./src/comm/threads/MessageQueueSingle.tpp: In member function ‘std::tuple<bool, std::vector<T, std::allocator<_CharT> > > MessageQueueSingle::consume(int)’:
./src/comm/threads/MessageQueueSingle.tpp:37:35: error: template argument 1 is invalid
37 | auto msg = std::vector();
| ^
./src/comm/threads/MessageQueueSingle.tpp:37:35: error: template argument 2 is invalid
At global scope:
cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning’ may have been intended to silence earlier diagnostics
cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics
make: *** [Makefile:5278: src/apps/yggdrasil-exabayes.o] Error 1

Any assistance or solution would be greatly appreciated.

Thank you!

Oriol