Not able to run on colab #69
Comments
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Hey @chsharma27 did you run |
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Hi, running Table QA on Collab now is unrealistic since it works on Python 3.8. I had no problems running it on my computer in a virtual 3.8. env. After a serious amount of time, I gave up on trying collab because of a bunch of problems with requirements and other stuff related to the installation of Python 3.8. Hope it helps. |
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I had the same issue while installing tableqa, and installing transformers separately did not help. Howerver, downgrading to python 3.9.10 did the trick and I managed to install it without further issues |
Did it worked well on 3.9.10 |
It corrected the issue with building wheels while installing. Then you can run the collab, but I can't get the agent.query_db() function to work. The agent.get_query() runs without issue, but the generated SQL is usually wrong on the datasets I test it on... |
When I am trying to run it on colab, getting the following error:
Looking in indexes: https://pypi.org/simple, https://us-python.pkg.dev/colab-wheels/public/simple/
Collecting tableqa
Using cached tableqa-0.0.10-py3-none-any.whl (930 kB)
Requirement already satisfied: matplotlib in /usr/local/lib/python3.10/dist-packages (from tableqa) (3.7.1)
Requirement already satisfied: pandas in /usr/local/lib/python3.10/dist-packages (from tableqa) (1.5.3)
Collecting transformers[tf-cpu]==3.0.2
Using cached transformers-3.0.2-py3-none-any.whl (769 kB)
Collecting rake-nltk
Using cached rake_nltk-1.0.6-py3-none-any.whl (9.1 kB)
Collecting graphql-core==2.3
Using cached graphql_core-2.3-py2.py3-none-any.whl (251 kB)
Collecting responder
Using cached responder-2.0.7-py3-none-any.whl (24 kB)
Collecting graphene==2.1.8
Using cached graphene-2.1.8-py2.py3-none-any.whl (107 kB)
Requirement already satisfied: tensorflow-hub in /usr/local/lib/python3.10/dist-packages (from tableqa) (0.13.0)
Requirement already satisfied: sqlalchemy in /usr/local/lib/python3.10/dist-packages (from tableqa) (2.0.10)
Requirement already satisfied: nltk in /usr/local/lib/python3.10/dist-packages (from tableqa) (3.8.1)
Collecting graphql-relay<3,>=2
Using cached graphql_relay-2.0.1-py3-none-any.whl (20 kB)
Requirement already satisfied: six<2,>=1.10.0 in /usr/local/lib/python3.10/dist-packages (from graphene==2.1.8->tableqa) (1.16.0)
Collecting aniso8601<=7,>=3
Using cached aniso8601-7.0.0-py2.py3-none-any.whl (42 kB)
Collecting rx<2,>=1.6
Using cached Rx-1.6.3-py2.py3-none-any.whl
Requirement already satisfied: promise<3,>=2.3 in /usr/local/lib/python3.10/dist-packages (from graphql-core==2.3->tableqa) (2.3)
Requirement already satisfied: filelock in /usr/local/lib/python3.10/dist-packages (from transformers[tf-cpu]==3.0.2->tableqa) (3.12.0)
Collecting sentencepiece!=0.1.92
Using cached sentencepiece-0.1.99-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.3 MB)
Requirement already satisfied: packaging in /usr/local/lib/python3.10/dist-packages (from transformers[tf-cpu]==3.0.2->tableqa) (23.1)
Requirement already satisfied: tqdm>=4.27 in /usr/local/lib/python3.10/dist-packages (from transformers[tf-cpu]==3.0.2->tableqa) (4.65.0)
Requirement already satisfied: regex!=2019.12.17 in /usr/local/lib/python3.10/dist-packages (from transformers[tf-cpu]==3.0.2->tableqa) (2022.10.31)
Requirement already satisfied: requests in /usr/local/lib/python3.10/dist-packages (from transformers[tf-cpu]==3.0.2->tableqa) (2.27.1)
Requirement already satisfied: numpy in /usr/local/lib/python3.10/dist-packages (from transformers[tf-cpu]==3.0.2->tableqa) (1.22.4)
Collecting tokenizers==0.8.1.rc1
Using cached tokenizers-0.8.1rc1.tar.gz (97 kB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting sacremoses
Using cached sacremoses-0.0.53-py3-none-any.whl
Collecting keras2onnx
Using cached keras2onnx-1.7.0-py3-none-any.whl (96 kB)
Collecting tensorflow-cpu
Using cached tensorflow_cpu-2.12.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (231.8 MB)
Collecting onnxconverter-common
Using cached onnxconverter_common-1.13.0-py2.py3-none-any.whl (83 kB)
Requirement already satisfied: contourpy>=1.0.1 in /usr/local/lib/python3.10/dist-packages (from matplotlib->tableqa) (1.0.7)
Requirement already satisfied: cycler>=0.10 in /usr/local/lib/python3.10/dist-packages (from matplotlib->tableqa) (0.11.0)
Requirement already satisfied: pyparsing>=2.3.1 in /usr/local/lib/python3.10/dist-packages (from matplotlib->tableqa) (3.0.9)
Requirement already satisfied: fonttools>=4.22.0 in /usr/local/lib/python3.10/dist-packages (from matplotlib->tableqa) (4.39.3)
Requirement already satisfied: python-dateutil>=2.7 in /usr/local/lib/python3.10/dist-packages (from matplotlib->tableqa) (2.8.2)
Requirement already satisfied: pillow>=6.2.0 in /usr/local/lib/python3.10/dist-packages (from matplotlib->tableqa) (8.4.0)
Requirement already satisfied: kiwisolver>=1.0.1 in /usr/local/lib/python3.10/dist-packages (from matplotlib->tableqa) (1.4.4)
Requirement already satisfied: joblib in /usr/local/lib/python3.10/dist-packages (from nltk->tableqa) (1.2.0)
Requirement already satisfied: click in /usr/local/lib/python3.10/dist-packages (from nltk->tableqa) (8.1.3)
Requirement already satisfied: pytz>=2020.1 in /usr/local/lib/python3.10/dist-packages (from pandas->tableqa) (2022.7.1)
Collecting python-multipart
Using cached python_multipart-0.0.6-py3-none-any.whl (45 kB)
Collecting graphql-server-core>=1.1
Using cached graphql_server_core-2.0.0-py2.py3-none-any.whl
Collecting uvicorn[standard]<0.13.3,>=0.12.0
Using cached uvicorn-0.13.2-py3-none-any.whl (45 kB)
Collecting marshmallow
Using cached marshmallow-3.19.0-py3-none-any.whl (49 kB)
Collecting starlette==0.13.*
Using cached starlette-0.13.8-py3-none-any.whl (60 kB)
Collecting apispec>=1.0.0b1
Using cached apispec-6.3.0-py3-none-any.whl (29 kB)
Collecting docopt
Using cached docopt-0.6.2-py2.py3-none-any.whl
Collecting requests-toolbelt
Using cached requests_toolbelt-1.0.0-py2.py3-none-any.whl (54 kB)
Collecting apistar
Using cached apistar-0.7.2-py3-none-any.whl
Requirement already satisfied: itsdangerous in /usr/local/lib/python3.10/dist-packages (from responder->tableqa) (2.1.2)
Requirement already satisfied: chardet in /usr/local/lib/python3.10/dist-packages (from responder->tableqa) (4.0.0)
Requirement already satisfied: pyyaml in /usr/local/lib/python3.10/dist-packages (from responder->tableqa) (6.0)
Requirement already satisfied: jinja2 in /usr/local/lib/python3.10/dist-packages (from responder->tableqa) (3.1.2)
Collecting rfc3986
Using cached rfc3986-2.0.0-py2.py3-none-any.whl (31 kB)
Collecting whitenoise
Using cached whitenoise-6.4.0-py3-none-any.whl (19 kB)
Collecting aiofiles
Using cached aiofiles-23.1.0-py3-none-any.whl (14 kB)
Requirement already satisfied: greenlet!=0.4.17 in /usr/local/lib/python3.10/dist-packages (from sqlalchemy->tableqa) (2.0.2)
Requirement already satisfied: typing-extensions>=4.2.0 in /usr/local/lib/python3.10/dist-packages (from sqlalchemy->tableqa) (4.5.0)
Requirement already satisfied: protobuf>=3.19.6 in /usr/local/lib/python3.10/dist-packages (from tensorflow-hub->tableqa) (3.20.3)
Collecting click
Using cached click-7.1.2-py2.py3-none-any.whl (82 kB)
Collecting h11>=0.8
Using cached h11-0.14.0-py3-none-any.whl (58 kB)
Collecting websockets==8.*
Using cached websockets-8.1-cp310-cp310-linux_x86_64.whl
Collecting python-dotenv>=0.13.*
Using cached python_dotenv-1.0.0-py3-none-any.whl (19 kB)
Collecting httptools==0.1.*
Using cached httptools-0.1.2-cp310-cp310-linux_x86_64.whl
Collecting uvloop>=0.14.0
Using cached uvloop-0.17.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.1 MB)
Collecting watchgod<0.7,>=0.6
Using cached watchgod-0.6-py35.py36.py37-none-any.whl (10 kB)
Collecting typesystem
Using cached typesystem-0.4.1-py3-none-any.whl (28 kB)
Requirement already satisfied: MarkupSafe>=2.0 in /usr/local/lib/python3.10/dist-packages (from jinja2->responder->tableqa) (2.1.2)
Collecting onnx
Using cached onnx-1.13.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.5 MB)
Collecting fire
Using cached fire-0.5.0-py2.py3-none-any.whl
Requirement already satisfied: urllib3<1.27,>=1.21.1 in /usr/local/lib/python3.10/dist-packages (from requests->transformers[tf-cpu]==3.0.2->tableqa) (1.26.15)
Requirement already satisfied: idna<4,>=2.5 in /usr/local/lib/python3.10/dist-packages (from requests->transformers[tf-cpu]==3.0.2->tableqa) (3.4)
Requirement already satisfied: charset-normalizer~=2.0.0 in /usr/local/lib/python3.10/dist-packages (from requests->transformers[tf-cpu]==3.0.2->tableqa) (2.0.12)
Requirement already satisfied: certifi>=2017.4.17 in /usr/local/lib/python3.10/dist-packages (from requests->transformers[tf-cpu]==3.0.2->tableqa) (2022.12.7)
Requirement already satisfied: gast<=0.4.0,>=0.2.1 in /usr/local/lib/python3.10/dist-packages (from tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (0.4.0)
Requirement already satisfied: absl-py>=1.0.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (1.4.0)
Requirement already satisfied: jax>=0.3.15 in /usr/local/lib/python3.10/dist-packages (from tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (0.4.8)
Requirement already satisfied: google-pasta>=0.1.1 in /usr/local/lib/python3.10/dist-packages (from tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (0.2.0)
Requirement already satisfied: opt-einsum>=2.3.2 in /usr/local/lib/python3.10/dist-packages (from tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (3.3.0)
Requirement already satisfied: tensorflow-estimator<2.13,>=2.12.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (2.12.0)
Requirement already satisfied: libclang>=13.0.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (16.0.0)
Requirement already satisfied: grpcio<2.0,>=1.24.3 in /usr/local/lib/python3.10/dist-packages (from tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (1.54.0)
Requirement already satisfied: setuptools in /usr/local/lib/python3.10/dist-packages (from tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (67.7.2)
Requirement already satisfied: h5py>=2.9.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (3.8.0)
Requirement already satisfied: astunparse>=1.6.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (1.6.3)
Requirement already satisfied: flatbuffers>=2.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (23.3.3)
Requirement already satisfied: tensorboard<2.13,>=2.12 in /usr/local/lib/python3.10/dist-packages (from tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (2.12.2)
Requirement already satisfied: keras<2.13,>=2.12.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (2.12.0)
Requirement already satisfied: tensorflow-io-gcs-filesystem>=0.23.1 in /usr/local/lib/python3.10/dist-packages (from tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (0.32.0)
Requirement already satisfied: wrapt<1.15,>=1.11.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (1.14.1)
Requirement already satisfied: termcolor>=1.1.0 in /usr/local/lib/python3.10/dist-packages (from tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (2.3.0)
Requirement already satisfied: wheel<1.0,>=0.23.0 in /usr/local/lib/python3.10/dist-packages (from astunparse>=1.6.0->tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (0.40.0)
Requirement already satisfied: scipy>=1.7 in /usr/local/lib/python3.10/dist-packages (from jax>=0.3.15->tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (1.10.1)
Requirement already satisfied: ml-dtypes>=0.0.3 in /usr/local/lib/python3.10/dist-packages (from jax>=0.3.15->tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (0.1.0)
Requirement already satisfied: tensorboard-plugin-wit>=1.6.0 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.13,>=2.12->tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (1.8.1)
Requirement already satisfied: tensorboard-data-server<0.8.0,>=0.7.0 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.13,>=2.12->tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (0.7.0)
Requirement already satisfied: markdown>=2.6.8 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.13,>=2.12->tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (3.4.3)
Requirement already satisfied: werkzeug>=1.0.1 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.13,>=2.12->tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (2.3.0)
Requirement already satisfied: google-auth-oauthlib<1.1,>=0.5 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.13,>=2.12->tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (1.0.0)
Requirement already satisfied: google-auth<3,>=1.6.3 in /usr/local/lib/python3.10/dist-packages (from tensorboard<2.13,>=2.12->tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (2.17.3)
Requirement already satisfied: rsa<5,>=3.1.4 in /usr/local/lib/python3.10/dist-packages (from google-auth<3,>=1.6.3->tensorboard<2.13,>=2.12->tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (4.9)
Requirement already satisfied: cachetools<6.0,>=2.0.0 in /usr/local/lib/python3.10/dist-packages (from google-auth<3,>=1.6.3->tensorboard<2.13,>=2.12->tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (5.3.0)
Requirement already satisfied: pyasn1-modules>=0.2.1 in /usr/local/lib/python3.10/dist-packages (from google-auth<3,>=1.6.3->tensorboard<2.13,>=2.12->tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (0.3.0)
Requirement already satisfied: requests-oauthlib>=0.7.0 in /usr/local/lib/python3.10/dist-packages (from google-auth-oauthlib<1.1,>=0.5->tensorboard<2.13,>=2.12->tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (1.3.1)
Requirement already satisfied: pyasn1<0.6.0,>=0.4.6 in /usr/local/lib/python3.10/dist-packages (from pyasn1-modules>=0.2.1->google-auth<3,>=1.6.3->tensorboard<2.13,>=2.12->tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (0.5.0)
Requirement already satisfied: oauthlib>=3.0.0 in /usr/local/lib/python3.10/dist-packages (from requests-oauthlib>=0.7.0->google-auth-oauthlib<1.1,>=0.5->tensorboard<2.13,>=2.12->tensorflow-cpu->transformers[tf-cpu]==3.0.2->tableqa) (3.2.2)
Building wheels for collected packages: tokenizers
error: subprocess-exited-with-error
× Building wheel for tokenizers (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> See above for output.
note: This error originates from a subprocess, and is likely not a problem with pip.
Building wheel for tokenizers (pyproject.toml) ... error
ERROR: Failed building wheel for tokenizers
Failed to build tokenizers
ERROR: Could not build wheels for tokenizers, which is required to install pyproject.toml-based projects
Can anybody help me? Thanks in advance.
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