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Data Extraction & Preprocessing #1

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Jimyung6642 opened this issue Jul 15, 2019 · 2 comments
Open

Data Extraction & Preprocessing #1

Jimyung6642 opened this issue Jul 15, 2019 · 2 comments

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@Jimyung6642
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  1. ATLAS Cohort extraction function is not available now
  2. note_text extraction according to the note_types is not available
  3. A single note_type of a single condition diagnosed patients contains reports of diverse organs or anatomic sites. Additional preprocessing such as adding user-defined regexpr or term selection is needed
@Jimyung6642
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1 & 2 are updated yet 3 still needs to be updated.

@Jimyung6642
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Data extraction need to be separated into 2 parts; DB connection and Uploading file from the local environment.

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