MRNet

[MRNet - A Deep Learning Based Multitasking Model for Respiration Rate Estimation in Practical Settings]

Research

Architecture

The architecture consist three blocks Encoder (B1), Decoder (B2), and IncResNet with Dense Layer (B3) as shown in figure below:

Different configuration using these blocks are designed as part of work. These configurations also differ in terms of inputs and outputs as given in the figure below:

Datasets

1. PPG Dalia Dataset

Quantitative Comparisons

The comparison of the proposed model is done against the previously proposed works. The proposed model is also compared against the different configuration developed as a part of work. The comparison is done in tems of Mean Square Error (MAE), Root Mean Square Error (RMSE), Parament Count (PC) and Inference time as shown in table below:

The evaluation of model is also done during different activities, also to check the degree of agreement between the estimated RR and ground truth RR the box plot is used as shown below:

Repository Structure

.
├── Dayi_Bian
│   ├── CNN_EVAL.ipynb
│   ├── data_extraction.py
│   ├── data_file_generator.py
│   ├── filters.py
│   ├── hrv_analysis
│   │   ├── extract_features.py
│   │   ├── preprocessing.py
│   │   └── __pycache__
│   │       └── extract_features.cpython-38.pyc
│   ├── model.py
│   ├── new_testbench.py
│   ├── __pycache__
│   │   ├── data_extraction.cpython-38.pyc
│   │   ├── filters.cpython-38.pyc
│   │   ├── model.cpython-38.pyc
│   │   ├── resp_signal_extraction.cpython-38.pyc
│   │   └── rr_extration.cpython-38.pyc
│   ├── requirement.txt
│   ├── resp_signal_extraction.py
│   └── rr_extration.py
├── DL_Model
│   ├── data_extraction.py
│   ├── data_file_generator.py
│   ├── eval_testbench.ipynb
│   ├── filters.py
│   ├── hrv_analysis
│   │   ├── extract_features.py
│   │   └── preprocessing.py
│   ├── new_testbench.py
│   ├── requirement.txt
│   ├── resp_signal_extraction.py
│   ├── rr_extration.py
│   └── tf_model.py
├── LICENSE
├── plot
│   ├── activity_plot.png
│   ├── bland_altman.png
│   ├── Box_plot.png
│   ├── modality_plot.png
│   ├── Model_Table_6.0.png
│   ├── Plots_boc_ba.jpg
│   ├── RespNet2_V2.0_block_crop.png
│   └── Results.png
├── README.md
└── Smart_Fusion
    ├── edr_adr_signal_extraction.py
    ├── extract_features.py
    ├── filters.py
    ├── hrv_analysis
    │   ├── extract_features.py
    │   └── preprocessing.py
    ├── machine_learning.py
    ├── plots.py
    ├── ppg_dalia_data_extraction.py
    ├── preprocessing.py
    ├── Ref_signal_Testbench.ipynb
    ├── Respiratory_signal_plot_testbench .ipynb
    ├── rqi_extraction.py
    ├── rr_extraction.py
    ├── testbench.py
    └── validation.py

Acknowledgements

• hrv_analysis
• Tensorflow

Authors

• Kapil Singh Rathore

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NOTE:

• To run the specific method, open the corresponding folder and follow the steps.
• Futhur modifications will be done in upcoming versions...

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