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test_pyscf.py
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test_pyscf.py
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#!/usr/bin/env python3
## vi: tabstop=4 shiftwidth=4 softtabstop=4 expandtab
## ---------------------------------------------------------------------
##
## Copyright (C) 2018 by the adcc authors
##
## This file is part of adcc.
##
## adcc is free software: you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published
## by the Free Software Foundation, either version 3 of the License, or
## (at your option) any later version.
##
## adcc is distributed in the hope that it will be useful,
## but WITHOUT ANY WARRANTY; without even the implied warranty of
## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
## GNU General Public License for more details.
##
## You should have received a copy of the GNU General Public License
## along with adcc. If not, see <http://www.gnu.org/licenses/>.
##
## ---------------------------------------------------------------------
import unittest
import numpy as np
import adcc
import adcc.backends
from ..misc import expand_test_templates
from .testing import (eri_asymm_construction_test, eri_chem_permutations,
operator_import_from_ao_test)
from numpy.testing import assert_almost_equal
from adcc.backends import have_backend
from adcc.testdata import static_data
import pytest
basissets = ["sto3g", "ccpvdz"]
@expand_test_templates(basissets)
@pytest.mark.skipif(not have_backend("pyscf"), reason="pyscf not found.")
class TestPyscf(unittest.TestCase):
def base_test(self, scfres):
from pyscf import scf
hfdata = adcc.backends.import_scf_results(scfres)
assert hfdata.backend == "pyscf"
n_orbs_alpha = hfdata.n_orbs_alpha
fock_bb = scfres.get_fock()
if hfdata.restricted:
assert hfdata.spin_multiplicity != 0
assert hfdata.n_alpha >= hfdata.n_beta
# Check SCF type fits
assert isinstance(scfres, (scf.rhf.RHF, scf.rohf.ROHF))
assert not isinstance(scfres, scf.uhf.UHF)
assert hfdata.n_orbs_alpha == hfdata.n_orbs_beta
assert np.all(hfdata.orben_f[:n_orbs_alpha]
== hfdata.orben_f[n_orbs_alpha:])
mo_occ = (scfres.mo_occ / 2, scfres.mo_occ / 2)
mo_energy = (scfres.mo_energy, scfres.mo_energy)
mo_coeff = (scfres.mo_coeff, scfres.mo_coeff)
fock_bb = (fock_bb, fock_bb)
else:
# Check SCF type fits
assert isinstance(scfres, scf.uhf.UHF)
assert hfdata.n_alpha >= hfdata.n_beta
mo_occ = scfres.mo_occ
mo_energy = scfres.mo_energy
mo_coeff = scfres.mo_coeff
# Check n_alpha and n_beta
assert hfdata.n_alpha == np.sum(mo_occ[0] > 0)
assert hfdata.n_beta == np.sum(mo_occ[1] > 0)
# occupation_f
assert_almost_equal(hfdata.occupation_f,
np.hstack((mo_occ[0], mo_occ[1])))
# orben_f
assert_almost_equal(hfdata.orben_f,
np.hstack((mo_energy[0], mo_energy[1])))
# orbcoeff_fb
assert_almost_equal(hfdata.orbcoeff_fb, np.transpose(np.hstack((
mo_coeff[0], mo_coeff[1]
))))
# fock_ff
fock = tuple(mo_coeff[i].transpose().conj() @ fock_bb[i] @ mo_coeff[i]
for i in range(2))
fullfock_ff = np.zeros((hfdata.n_orbs, hfdata.n_orbs))
fullfock_ff[:n_orbs_alpha, :n_orbs_alpha] = fock[0]
fullfock_ff[n_orbs_alpha:, n_orbs_alpha:] = fock[1]
assert_almost_equal(hfdata.fock_ff, fullfock_ff)
# test symmetry of the ERI tensor
eri = np.empty((hfdata.n_orbs, hfdata.n_orbs,
hfdata.n_orbs, hfdata.n_orbs))
sfull = slice(0, hfdata.n_orbs)
hfdata.fill_eri_ffff((sfull, sfull, sfull, sfull), eri)
for perm in eri_chem_permutations:
eri_perm = np.transpose(eri, perm)
assert_almost_equal(eri_perm, eri)
def operators_test(self, mf):
# Test dipole
ao_dip = mf.mol.intor_symmetric('int1e_r', comp=3)
operator_import_from_ao_test(mf, list(ao_dip))
# Test magnetic dipole
with mf.mol.with_common_orig([0.0, 0.0, 0.0]):
ao_magdip = 0.5 * mf.mol.intor('int1e_cg_irxp', comp=3, hermi=2)
operator_import_from_ao_test(mf, list(ao_magdip), "magnetic_dipole")
# Test nabla
ao_linmom = -1.0 * mf.mol.intor('int1e_ipovlp', comp=3, hermi=2)
operator_import_from_ao_test(mf, list(ao_linmom), "nabla")
def template_rhf_h2o(self, basis):
mf = adcc.backends.run_hf("pyscf", static_data.xyz["h2o"], basis)
self.base_test(mf)
self.operators_test(mf)
# Test ERI
eri_asymm_construction_test(mf)
eri_asymm_construction_test(mf, core_orbitals=1)
def template_uhf_ch2nh2(self, basis):
mf = adcc.backends.run_hf(
"pyscf", static_data.xyz["ch2nh2"], basis, multiplicity=2
)
self.base_test(mf)
self.operators_test(mf)
# Test ERI
eri_asymm_construction_test(mf)
eri_asymm_construction_test(mf, core_orbitals=1)
def test_h2o_sto3g_core_hole(self):
from adcc.backends.pyscf import run_core_hole
mf = run_core_hole(static_data.xyz["h2o"], "sto3g")
self.base_test(mf)