Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Possible incompatibility of packages #9

Open
rwarnung opened this issue Feb 27, 2017 · 1 comment
Open

Possible incompatibility of packages #9

rwarnung opened this issue Feb 27, 2017 · 1 comment
Assignees

Comments

@rwarnung
Copy link

Hi, I just installed the CRAN version.
I train a classifier using various packages and when I finally want to call classifierplots I get the error

alpha level NA, not in [0,1]

I can not share my whole code and data here. If I run the base example after doing my calculations I get the error too.
So there might be an incompatibility with the packages already loaded.

Do you have any idea if you look at the list of packages loaded.
Is there anything I can check?
Thank you!

library(classifierplots)
classifierplots(example_predictions$test.y, example_predictions$pred.prob)

and got the error:

[1] "Calculating AUC ..."
[1] "(AUC) Sorting data ..."
[1] "(AUC) Calculating ranks ..."
[1] "AUC: 90.5603213507625"
[1] "Bootstrapping ROC curves"
[1] "Eval AUC"
[1] "Producing ROC plot"
[1] "Generating score density plot"
Error in grDevices::rgb(col[1, ], col[2, ], col[3, ], alpha) :
alpha level NA, not in [0,1]
In addition: Warning message:
In grDevices::rgb(col[1, ], col[2, ], col[3, ], alpha) :
NAs introduced by coercion

my sessionInfo() is

R version 3.3.1 (2016-06-21)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1

locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252

attached base packages:
[1] stats graphics grDevices utils datasets methods base

other attached packages:
[1] earth_4.4.7 plotmo_3.2.0 TeachingDemos_2.10 plotrix_3.6-3 classifierplots_1.3.2
[6] data.table_1.10.4 mlr_2.10 ParamHelpers_1.10 reshape_0.8.6 fastICA_1.2-0
[11] corrplot_0.77 e1071_1.6-8 dplyr_0.5.0 purrr_0.2.2 readr_1.0.0
[16] tidyr_0.6.1 tibble_1.2 ggplot2_2.2.1 tidyverse_1.1.1

loaded via a namespace (and not attached):
[1] httr_1.2.1 jsonlite_1.1 splines_3.3.1 foreach_1.4.3 modelr_0.1.0 gtools_3.5.0
[7] LiblineaR_1.94-2 assertthat_0.1 stats4_3.3.1 deepnet_0.2 backports_1.0.3 lattice_0.20-33
[13] quantreg_5.29 checkmate_1.8.2 rvest_0.3.2 minqa_1.2.4 colorspace_1.3-2 Matrix_1.2-6
[19] plyr_1.8.4 psych_1.6.12 broom_0.4.1 SparseM_1.74 haven_1.0.0 caret_6.0-73
[25] corpcor_1.6.8 scales_0.4.1 parallelMap_1.3 gdata_2.17.0 sda_1.3.7 fdrtool_1.2.15
[31] MatrixModels_0.4-1 lme4_1.1-12 mgcv_1.8-12 car_2.1-3 xgboost_0.6-4 pacman_0.4.1
[37] ROCR_1.0-7 nnet_7.3-12 lazyeval_0.2.0 pbkrtest_0.4-6 mnormt_1.5-5 survival_2.39-4
[43] magrittr_1.5 readxl_0.1.1 nlme_3.1-128 MASS_7.3-45 gplots_3.0.1 forcats_0.2.0
[49] xml2_1.1.0 foreign_0.8-66 class_7.3-14 tools_3.3.1 hms_0.3 BBmisc_1.10
[55] stringr_1.1.0 munsell_0.4.3 entropy_1.2.1 caTools_1.17.1 grid_3.3.1 nloptr_1.0.4
[61] iterators_1.0.8 labeling_0.3 bitops_1.0-6 gtable_0.2.0 ModelMetrics_1.1.0 codetools_0.2-14
[67] DBI_0.5-1 reshape2_1.4.2 R6_2.1.3 gridExtra_2.2.1 lubridate_1.6.0 KernSmooth_2.23-15

@adefazio
Copy link
Owner

Hi,
Sorry for the late response. I'll look into this, but I can't promise a quick fix.

@adefazio adefazio self-assigned this Mar 13, 2017
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants