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environment.yml
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environment.yml
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name: int_organoids
channels:
- pytorch
- conda-forge
- defaults
dependencies:
- abseil-cpp=20211102.0=h36ffca9_3
- aiofiles=22.1.0=pyhd8ed1ab_0
- aiohttp=3.9.1=py39ha55989b_0
- aiosignal=1.3.1=pyhd8ed1ab_0
- aiosqlite=0.19.0=pyhd8ed1ab_0
- alabaster=0.7.16=pyhd8ed1ab_0
- anyio=3.7.1=pyhd8ed1ab_0
- aom=3.5.0=h63175ca_0
- apoc-backend=0.12.0=pyhd8ed1ab_0
- app-model=0.2.4=pyhd8ed1ab_0
- appdirs=1.4.4=pyh9f0ad1d_0
- argon2-cffi=23.1.0=pyhd8ed1ab_0
- argon2-cffi-bindings=21.2.0=py39ha55989b_4
- arrow=1.3.0=pyhd8ed1ab_0
- arrow-cpp=14.0.2=ha81ea56_1
- asciitree=0.3.3=py_2
- asttokens=2.4.1=pyhd8ed1ab_0
- async-timeout=4.0.3=pyhd8ed1ab_0
- attrs=23.2.0=pyh71513ae_0
- autopep8=2.0.4=pyhd8ed1ab_0
- aws-c-auth=0.6.21=h0fd8c68_3
- aws-c-cal=0.5.20=h4b5e85a_3
- aws-c-common=0.8.5=hcfcfb64_0
- aws-c-compression=0.2.16=h3dc32ea_0
- aws-c-event-stream=0.2.17=h4de63fd_1
- aws-c-http=0.7.0=h28290ff_0
- aws-c-io=0.13.12=hea55e33_1
- aws-c-mqtt=0.7.13=h0d1d87f_12
- aws-c-s3=0.2.1=h898862f_4
- aws-c-sdkutils=0.1.7=h3dc32ea_0
- aws-checksums=0.1.14=h3dc32ea_0
- aws-crt-cpp=0.18.16=h977b11b_8
- aws-sdk-cpp=1.10.55=haf3c795_0
- babel=2.14.0=pyhd8ed1ab_0
- beautifulsoup4=4.12.3=pyha770c72_0
- blas=2.121=mkl
- blas-devel=3.9.0=21_win64_mkl
- bleach=6.1.0=pyhd8ed1ab_0
- blosc=1.21.5=hdccc3a2_0
- bokeh=3.3.4=pyhd8ed1ab_0
- boost-cpp=1.84.0=h6f18f0d_0
- brotli=1.0.9=hcfcfb64_9
- brotli-bin=1.0.9=hcfcfb64_9
- brotli-python=1.0.9=py39h99910a6_9
- bzip2=1.0.8=hcfcfb64_5
- c-ares=1.26.0=hcfcfb64_0
- c-blosc2=2.13.2=h183a6f4_0
- ca-certificates=2024.2.2=h56e8100_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cachetools=5.3.2=pyhd8ed1ab_0
- cachey=0.2.1=pyh9f0ad1d_0
- cellpose=2.2.3=pyhd8ed1ab_0
- certifi=2024.2.2=pyhd8ed1ab_0
- cffi=1.16.0=py39ha55989b_0
- cfitsio=4.2.0=h9ebe7e4_0
- charls=2.3.4=h39d44d4_0
- charset-normalizer=3.3.2=pyhd8ed1ab_0
- click=8.1.7=win_pyh7428d3b_0
- cloudpickle=3.0.0=pyhd8ed1ab_0
- colorama=0.4.6=pyhd8ed1ab_0
- comm=0.2.1=pyhd8ed1ab_0
- contourpy=1.2.0=py39h1f6ef14_0
- cryptography=42.0.2=py39h8e81318_0
- cycler=0.12.1=pyhd8ed1ab_0
- cython=0.29.37=py39h99910a6_0
- cytoolz=0.12.3=py39ha55989b_0
- czifile=2019.7.2=pyh9f0ad1d_0
- dask=2024.1.1=pyhd8ed1ab_0
- dask-core=2024.1.1=pyhd8ed1ab_0
- dask-image=2023.8.1=pyhd8ed1ab_0
- dav1d=1.2.1=hcfcfb64_0
- debugpy=1.8.0=py39h99910a6_1
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- deprecated=1.2.14=pyh1a96a4e_0
- devbio-napari=0.10.1=win_h08f2357_0
- distributed=2024.1.1=pyhd8ed1ab_0
- docstring_parser=0.15=pyhd8ed1ab_0
- docutils=0.17.1=py39hcbf5309_4
- eigen=3.4.0=h91493d7_0
- entrypoints=0.4=pyhd8ed1ab_0
- exceptiongroup=1.2.0=pyhd8ed1ab_2
- executing=2.0.1=pyhd8ed1ab_0
- fasteners=0.17.3=pyhd8ed1ab_0
- fastremap=1.14.0=py39h5c3ab46_1
- ffmpeg=4.3.1=ha925a31_0
- fftw=3.3.10=nompi_h38027f0_108
- filelock=3.13.1=pyhd8ed1ab_0
- fonttools=4.48.1=py39ha55989b_0
- fqdn=1.5.1=pyhd8ed1ab_0
- freeglut=3.2.2=h63175ca_2
- freetype=2.12.1=hdaf720e_2
- freetype-py=2.4.0=pyhd8ed1ab_0
- frozenlist=1.4.1=py39ha55989b_0
- fsspec=2024.2.0=pyhca7485f_0
- funcsigs=1.0.2=py_3
- gettext=0.21.1=h5728263_0
- gflags=2.2.2=ha925a31_1004
- giflib=5.2.1=h64bf75a_3
- glib=2.78.3=h12be248_0
- glib-tools=2.78.3=h12be248_0
- glog=0.5.0=h4797de2_0
- google-api-core=2.16.1=pyhd8ed1ab_0
- google-auth=2.27.0=pyhca7485f_0
- google-cloud-core=2.4.1=pyhd8ed1ab_0
- google-cloud-storage=2.14.0=pyhca7485f_0
- google-crc32c=1.1.2=py39h0def995_5
- google-resumable-media=2.7.0=pyhd8ed1ab_0
- googleapis-common-protos=1.62.0=pyhd8ed1ab_0
- grpc-cpp=1.48.2=hfe90ff0_1
- grpcio=1.46.3=py39hf7b6eba_0
- gst-plugins-base=1.22.9=h001b923_0
- gstreamer=1.22.9=hb4038d2_0
- hdbscan=0.8.33=py39hd88c2e4_4
- hdf5=1.12.2=nompi_h57737ce_101
- heapdict=1.0.1=py_0
- hsluv=5.0.4=pyhd8ed1ab_0
- icu=70.1=h0e60522_0
- idna=3.6=pyhd8ed1ab_0
- imagecodecs=2022.9.26=py39haf5b5c4_4
- imagecodecs-lite=2019.12.3=py39hd88c2e4_7
- imageio=2.33.1=pyh8c1a49c_0
- imageio-ffmpeg=0.4.9=pyhd8ed1ab_0
- imagesize=1.4.1=pyhd8ed1ab_0
- importlib-metadata=7.0.1=pyha770c72_0
- importlib-resources=6.1.1=pyhd8ed1ab_0
- importlib_metadata=7.0.1=hd8ed1ab_0
- importlib_resources=6.1.1=pyhd8ed1ab_0
- in-n-out=0.1.9=pyhd8ed1ab_0
- iniconfig=2.0.0=pyhd8ed1ab_0
- intel-openmp=2024.0.0=h57928b3_49841
- ipycanvas=0.13.1=pyhd8ed1ab_0
- ipyevents=2.0.2=pyhd8ed1ab_0
- ipykernel=6.29.2=pyha63f2e9_0
- ipython=8.18.1=pyh7428d3b_3
- ipython_genutils=0.2.0=py_1
- ipywidgets=8.1.1=pyhd8ed1ab_0
- isoduration=20.11.0=pyhd8ed1ab_0
- jasper=2.0.33=hc2e4405_1
- jedi=0.19.1=pyhd8ed1ab_0
- jinja2=3.1.3=pyhd8ed1ab_0
- joblib=1.3.2=pyhd8ed1ab_0
- jpeg=9e=h8ffe710_2
- json5=0.9.14=pyhd8ed1ab_0
- jsonpointer=2.4=py39hcbf5309_3
- jsonschema=4.21.1=pyhd8ed1ab_0
- jsonschema-specifications=2023.12.1=pyhd8ed1ab_0
- jsonschema-with-format-nongpl=4.21.1=pyhd8ed1ab_0
- jupyter=1.0.0=pyhd8ed1ab_10
- jupyter_client=7.4.9=pyhd8ed1ab_0
- jupyter_console=6.6.3=pyhd8ed1ab_0
- jupyter_core=5.7.1=py39hcbf5309_0
- jupyter_events=0.9.0=pyhd8ed1ab_0
- jupyter_server=1.24.0=pyhd8ed1ab_0
- jupyter_server_fileid=0.9.1=pyhd8ed1ab_0
- jupyter_server_ydoc=0.8.0=pyhd8ed1ab_0
- jupyter_ydoc=0.2.4=pyhd8ed1ab_0
- jupyterlab=3.6.7=pyhd8ed1ab_0
- jupyterlab_pygments=0.3.0=pyhd8ed1ab_0
- jupyterlab_server=2.25.2=pyhd8ed1ab_0
- jupyterlab_widgets=3.0.9=pyhd8ed1ab_0
- jupytext=1.16.1=pyhd8ed1ab_0
- jxrlib=1.1=hcfcfb64_3
- khronos-opencl-icd-loader=2023.04.17=h64bf75a_0
- kiwisolver=1.4.5=py39h1f6ef14_1
- krb5=1.20.1=heb0366b_0
- lazy_loader=0.3=pyhd8ed1ab_0
- lcms2=2.14=h90d422f_0
- lerc=4.0.0=h63175ca_0
- libabseil-static=20211102.0=cxx11_h58a5ce6_3
- libaec=1.1.2=h63175ca_1
- libavif=0.11.1=ha7b97ba_2
- libblas=3.9.0=21_win64_mkl
- libboost=1.84.0=h65993cd_0
- libboost-devel=1.84.0=h91493d7_0
- libboost-headers=1.84.0=h57928b3_0
- libbrotlicommon=1.0.9=hcfcfb64_9
- libbrotlidec=1.0.9=hcfcfb64_9
- libbrotlienc=1.0.9=hcfcfb64_9
- libcblas=3.9.0=21_win64_mkl
- libclang=15.0.7=default_h77d9078_3
- libclang13=15.0.7=default_h77d9078_3
- libcrc32c=1.1.2=h0e60522_0
- libcurl=8.1.2=h68f0423_0
- libdeflate=1.14=hcfcfb64_0
- libffi=3.4.2=h8ffe710_5
- libglib=2.78.3=h16e383f_0
- libhwloc=2.9.1=h51c2c0f_0
- libiconv=1.17=hcfcfb64_2
- libitk=5.3.0=h6e1890f_0
- libjpeg-turbo=2.1.4=hcfcfb64_0
- liblapack=3.9.0=21_win64_mkl
- liblapacke=3.9.0=21_win64_mkl
- libogg=1.3.4=h8ffe710_1
- libopencv=4.6.0=py39he11e404_0
- libpng=1.6.42=h19919ed_0
- libprotobuf=3.20.3=h12be248_0
- libsodium=1.0.18=h8d14728_1
- libsqlite=3.44.2=hcfcfb64_0
- libssh2=1.11.0=h7dfc565_0
- libthrift=0.15.0=h532d1ae_1
- libtiff=4.4.0=hc4f729c_5
- libuv=1.44.2=hcfcfb64_1
- libvorbis=1.3.7=h0e60522_0
- libwebp-base=1.3.2=hcfcfb64_0
- libxcb=1.13=hcd874cb_1004
- libxml2=2.10.4=hc3477c8_0
- libzlib=1.2.13=hcfcfb64_5
- libzopfli=1.0.3=h0e60522_0
- llvmlite=0.42.0=py39hd28a505_1
- locket=1.0.0=pyhd8ed1ab_0
- loguru=0.7.2=py39hcbf5309_1
- lz4=4.3.3=py39hf617134_0
- lz4-c=1.9.4=hcfcfb64_0
- m2w64-gcc-libgfortran=5.3.0=6
- m2w64-gcc-libs=5.3.0=7
- m2w64-gcc-libs-core=5.3.0=7
- m2w64-gmp=6.1.0=2
- m2w64-libwinpthread-git=5.0.0.4634.697f757=2
- magicgui=0.8.1=pyhd8ed1ab_0
- mako=1.3.2=pyhd8ed1ab_0
- markdown-it-py=3.0.0=pyhd8ed1ab_0
- markupsafe=2.1.5=py39ha55989b_0
- matplotlib-base=3.8.2=py39hf19769e_0
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- mdit-py-plugins=0.4.0=pyhd8ed1ab_0
- mdurl=0.1.2=pyhd8ed1ab_0
- mistune=3.0.2=pyhd8ed1ab_0
- mkl=2024.0.0=h66d3029_49657
- mkl-devel=2024.0.0=h57928b3_49657
- mkl-include=2024.0.0=h66d3029_49657
- mpmath=1.3.0=pyhd8ed1ab_0
- msgpack-python=1.0.7=py39h1f6ef14_0
- msys2-conda-epoch=20160418=1
- multidict=6.0.5=py39ha55989b_0
- munkres=1.1.4=pyh9f0ad1d_0
- mypy_extensions=1.0.0=pyha770c72_0
- napari=0.4.18=pyh9208f05_3
- napari-3d-ortho-viewer=0.1.5=pyhd8ed1ab_0
- napari-accelerated-pixel-and-object-classification=0.14.1=pyh9208f05_0
- napari-animation=0.0.7=pyhd8ed1ab_0
- napari-assistant=0.4.7=pyhd8ed1ab_0
- napari-blob-detection=0.0.2=pyhd8ed1ab_0
- napari-brightness-contrast=0.1.8=pyhd8ed1ab_0
- napari-clusters-plotter=0.7.3=pyhd8ed1ab_0
- napari-console=0.0.9=pyh9208f05_0
- napari-crop=0.1.9=pyhd8ed1ab_0
- napari-curtain=0.1.1=pyhd8ed1ab_0
- napari-czifile2=0.2.7=pyhd8ed1ab_0
- napari-folder-browser=0.1.3=pyhd8ed1ab_0
- napari-layer-details-display=0.1.5=pyhd8ed1ab_0
- napari-mouse-controls=0.1.3=pyhd8ed1ab_0
- napari-plot-profile=0.2.2=pyhd8ed1ab_0
- napari-plugin-engine=0.2.0=pyhd8ed1ab_2
- napari-plugin-search=0.1.3=pyhd8ed1ab_0
- napari-pyclesperanto-assistant=0.22.1=pyhd8ed1ab_0
- napari-pystackreg=0.1.4=pyhd8ed1ab_0
- napari-roi=0.1.8=pyhd8ed1ab_0
- napari-segment-blobs-and-things-with-membranes=0.3.7=pyhd8ed1ab_0
- napari-simpleitk-image-processing=0.4.5=pyhd8ed1ab_0
- napari-skimage-regionprops=0.10.1=pyhd8ed1ab_0
- napari-svg=0.1.10=pyhd8ed1ab_0
- napari-tabu=0.1.5=pyhd8ed1ab_0
- napari-time-slicer=0.5.0=pyhd8ed1ab_0
- napari-tools-menu=0.1.19=pyhd8ed1ab_0
- napari-workflow-inspector=0.2.2=pyhd8ed1ab_0
- napari-workflow-optimizer=0.1.4=pyhd8ed1ab_0
- napari-workflows=0.2.10=pyhd8ed1ab_0
- natsort=8.4.0=pyhd8ed1ab_0
- nbclassic=1.0.0=pyhb4ecaf3_1
- nbclient=0.8.0=pyhd8ed1ab_0
- nbconvert=7.16.0=pyhd8ed1ab_0
- nbconvert-core=7.16.0=pyhd8ed1ab_0
- nbconvert-pandoc=7.16.0=pyhd8ed1ab_0
- nbformat=5.9.2=pyhd8ed1ab_0
- nest-asyncio=1.6.0=pyhd8ed1ab_0
- networkx=3.2.1=pyhd8ed1ab_0
- notebook=6.5.6=pyha770c72_0
- notebook-shim=0.2.3=pyhd8ed1ab_0
- npe2=0.6.2=pyhd8ed1ab_0
- numba=0.59.0=py39h6836801_1
- numcodecs=0.12.1=py39h99910a6_0
- numpy=1.23.5=py39hbccbffa_0
- numpydoc=1.5.0=pyhd8ed1ab_0
- opencv=4.6.0=py39hcbf5309_0
- openjpeg=2.5.0=hc9384bd_1
- openssl=3.2.1=hcfcfb64_0
- orc=1.7.4=h623e30f_1
- packaging=23.2=pyhd8ed1ab_0
- pandas=2.2.0=py39h32e6231_0
- pandoc=3.1.3=h57928b3_0
- pandocfilters=1.5.0=pyhd8ed1ab_0
- parso=0.8.3=pyhd8ed1ab_0
- partd=1.4.1=pyhd8ed1ab_0
- patsy=0.5.6=pyhd8ed1ab_0
- pcre2=10.42=h17e33f8_0
- pickleshare=0.7.5=py_1003
- pillow=9.2.0=py39h595c93f_3
- pims=0.6.1=pyhd8ed1ab_1
- pint=0.23=pyhd8ed1ab_0
- pip=24.0=pyhd8ed1ab_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
- platformdirs=4.2.0=pyhd8ed1ab_0
- platymatch=0.0.3=pyhd8ed1ab_0
- plotly=5.18.0=pyhd8ed1ab_0
- pluggy=1.4.0=pyhd8ed1ab_0
- ply=3.11=py_1
- pooch=1.8.0=pyhd8ed1ab_0
- prometheus_client=0.19.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.42=pyha770c72_0
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prefix: C:\Users\albertds\mambaforge\envs\int_organoids