How can I explore the differences between subpopulations defined using population analysis?

[kopelol]

Hi, thank you for this attractive tool.

I'd like to explore the population specific genes using scoary.

As mentioned #64 , should I prepare trait file like this?

<style> </style>

	compA-B	compA-C	compB-C
ind1	1	0	NA
ind2	1	0	NA
....
ind101	0	NA	1
ind102	0	NA	1
.....
ind130	NA	1	0
ind131	NA	1	0

rather than

<style> </style>

	popA	popB	popC
ind1	1	0	0
ind2	1	0	0
....
ind101	0	1	0
ind102	0	1	0
.....
ind130	0	0	1
ind131	0	0	1

In addition, should I use arguments ---no_pairwise that aborts population structure correction ?

Best regards,