Why is BW1 so different in the following 2 plots?

[adw96]

plot(divnet_phylum_name, color = "red") +
ylim(0,2) + ylab("Shannon estimate with DivNet")

lee_phylum %>%
otu_table %>%
apply(2, shannon) %>%
data.frame("shannon" = .) %>%
rownames_to_column %>%
ggplot(aes(x = rowname, y = shannon)) +
geom_point() +
theme_bw() +
ylim(0,2) + ylab("Naive Shannon estimate") + xlab("samples")

[adw96]

How did you check this before closing it, @bryandmartin?

[bryandmartin]

Sorry, I closed the wrong issue here.

[adw96]

Thanks -- please just be careful in future. I just confirmed that 6e15eb3 did indeed fix this issue.