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_pkgdown.yml
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_pkgdown.yml
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destination: docs
title: santaR
url: https://adwolfer.github.io/santaR/
template:
bootstrap: 5
reference:
- title: Example dataset
desc: Acute inflammation
contents:
- acuteInflammation
- title: Quick start
desc: Functions designed for graphical or automated analysis
contents:
- santaR
- santaR_start_GUI
- santaR_auto_fit
- santaR_auto_summary
- santaR_plot
- title: Exported Functions
desc: Functions exported by santaR
contents:
- santaR_fit
- santaR_CBand
- santaR_pvalue_dist
- santaR_pvalue_fit
- santaR_pvalue_dist_within
- santaR_pvalue_fit_within
- title: Internals
desc: Internal functions and helpers
contents:
- AICc_smooth_spline
- AIC_smooth_spline
- BIC_smooth_spline
- get_eigen_DF
- get_eigen_DFoverlay_list
- get_eigen_spline
- get_eigen_spline_matrix
- get_grouping
- get_ind_time_matrix
- get_param_evolution
- loglik_smooth_spline
- plot_nbTP_histogram
- plot_param_evolution
- scaling_mean
- scaling_UV
navbar:
type: default
left:
- text: Intro
href: articles/getting-started.html
- text: Reference
href: reference/index.html
- text: Articles
menu:
- text: Getting started
href: articles/getting-started.html
- text: How to prepare input for santaR
href: articles/prepare-input-data.html
- text: Graphical User Interface
href: articles/santaR-GUI.html
- text: santaR theoretical background
href: articles/theoretical-background.html
- text: Selecting an optimal number of degrees of freedom
href: articles/selecting-optimal-df.html
- text: Automated command line analysis
href: articles/automated-command-line.html
- text: Plotting options
href: articles/plotting-options.html
- text: Advanced command line functions
href: articles/advanced-command-line-functions.html
right:
- icon: fa-github fa-lg
href: https://github.com/adwolfer/santaR