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input from fragments.tsv.gz? #68

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JBreunig opened this issue Feb 24, 2022 · 1 comment
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input from fragments.tsv.gz? #68

JBreunig opened this issue Feb 24, 2022 · 1 comment

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@JBreunig
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I'm trying to examine a published dataset and they provide only the fragments.tsv.gz. Is there any way to move forward with only this file?
Thanks in advance!
J
@cbravo93
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cbravo93 commented May 4, 2022

Hi JBreuning!

You can give it a try with createcisTopicObjectFrom10X, you will only need to mimic a metrics file as 10x with a column [,'is__cell_barcode'] specifying which barcodes to use.

Cheers!

C

@cbravo93 cbravo93 closed this as completed May 4, 2022
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@cbravo93 @JBreunig