ipole

Polarized covariant radiative transfer in C, for imaging black hole accretion systems such as those being imaged by the Event Horizon Telescope. ipole is described in Moscibrodzka and Gammie 2018.

This file details how to use ipole and includes a note about when it might not be be appropriate for your project.

Prerequisites

The only prerequisites are the GNU Scientific Library (GSL) and HDF5. Specifically, the executable h5cc should be in your PATH.

On Illinois EHT/BH cluster, this means loading the modules

$ module load gnu hdf5

On Linux machines, if you have root access, these can be installed to the system with

$ sudo apt install libhdf5-dev libgsl-dev

or

$ sudo dnf install hdf5-devel hdf5-static gsl-devel

The packages are straightforward to compile from source as well.

The native macOS version of clang does not support OpenMP parallelization, so on macOS with brew, install

$ brew install llvm gsl hdf5

these should all be binary packages, no compiling should be required.

Building

Then just build by running

$ make

with or without any of the usual make options, e.g., -j. You can make ipole into any destination directory by going there and then specifying the location of the makefile with -f. Note that ipole does not support building in directories that contain spaces.

If you are using your own version of HDF5, you can specify where to find it with

$ make CC=/path/to/h5cc

... or compile with parallel HDF5:

$ make CC=/path/to/h5pcc

A particular fluid model or data format can be specified with MODEL=model_name. For nearly all GRMHD fluid data, the iharm model should be used -- this is the default if no model is specified. After building a model, be sure to run make clean before building a different one.

The optional argument NOTES= can be any string containing no spaces. This string will be "baked-in" to the executable and printed out whenever the program is run.

Running

Parameter files

To facilitate runs over many files with similar parameters, ipole can read parameter files, specified with -par path/to/file.par.

Parameter files should be lists of key value pairs, one per line.

# Example parameter
thetacam 90.0

Empty lines and lines beginning with the # character are ignored. A list of supported parameters for each model can be found in the example.par file in its directory. Expected keys that do not appear in the parameter file will be set to a backward-compatible default value (see, e.g., par.c for more information). Unexpected keys are silently ignored for forward compatibility.

Command line

The same parameters can also be specified on the command line by using double-dash syntax,

$ ./ipole -par default.par --key1=value1 --key2=value2
$ ./ipole --freqcgs=230.e9 --MBH=6.2e9 --M_unit=1.e25 --thetacam=17 --dump=/path/to/dump.h5 --outfile=image.h5

In all cases, ipole reads parameters (and parameter files) in the order they are specified, overwriting when encountering a repeated parameter name. Thus for most use cases the parameter file should be specified first.

There are two command-line specific flags:

-unpol: Only compute using approximate "unpolarized" transfer equation. This speeds up computation and is useful for (e.g.) fitting Munit.

-quench: Don't write any files to disk.

These options do not affect the rest of the arguments.

Tracing

This version of ipole can output a file containing everything it used to compute a particular pixel. This includes the coordinate locations of each step along the geodesic, as well as several scalars at each point (see the format doc for specifics).

To activate tracing for a pixel (i,j), measured from the bottom left with i rightward along the x axis and j upward along y, run ipole with

$ ./ipole -par parameters.par --trace=1 --trace_i=i --trace_j=j

an alternative option trace_stride is available to trace every N pixels across the entire image.

Output

The ipole output format for images is documented here. Converters are available to translate output into FITS images, or into the old 7-column text format (i,j,F,I,Q,U,V).

The ipole output format for traces is documented here

ipole limitations

ipole is not a general-purpose imaging code. It has been designed, tested for, and used for modeling of particular sources. It may crash or produce incorrect results in other use cases. We strongly recommend you test the code in an appropriate regime before you use it.

The ipole algorithm is described in Moscibrodzka and Gammie 2018. The original version can be found here. Each radiative transfer step is based on an analytic solution to the polarized transfer equation assuming constant coefficients. This is intended to produce sensible results even when absorption or Faraday rotation and conversion are large in a single step. A comparison of polarized relativistic radiative transport schemes can be found in Prather (2021, in prep).

If you are imaging GRMHD simulations, you will find guidance on how a GRMHD simulation and analysis pipeline fits together in the PATOKA pipeline paper, Wong (2021, in prep).

ipole treats synchrotron emission and absorption but not bremsstrahlung or Compton scattering. The transfer coefficients (emissivities, absorptivities, and rotativities) are drawn from analytic fits presented in Dexter 2016 , Pandya 2016, Pandya 2018, and Marszewski 2021, with a summary in the latter. All coefficients assume that the electron distribution function is isotropic and that the frequency is large compared to the plasma frequency and cyclotron frequency. ipole implements fits for several electron distribution, including a thermal (Maxwell-Juttner) distribution, a power-law distribution, and a kappa distribution.

Support and Contributing

We welcome contributions and pull requests from the community implementing new features or issue fixes. Not every new application fits the ipole scope, however, and we reserve the right to choose which features to support.

You are welcome to file issues in this repository to ask questions of general interest and report when ipole doesn't work for you. Please keep in mind that while bugs related to ipole's primary purpose will likely be given attention quickly, new uses and extensions can only be supported on a best-effort basis.

ipole is an open source, community code that originated in the AFD group at Illinois and in the Astrophysics group at Radboud. Unfortunately we are not funded to provide support for all users, so you may need to do some detective work yourself. We will prioritize fixing problems that are manifestly bugs, rather than problems encountered in extending ipole into new parameter regimes.

Funding

Funding for the development of ipole at Illinois was provided by the National Science Foundation under multiple grants, including NSF AST 17-16327, NSF OISE 17-43747, NSF AST 20-07936, and NSF AST 20-34306.