I can't install Madagascar on Ubuntu22.04.

[zhangxiaoshuotttt]

Hi:
I can't install Madagascar on Ubuntu22.04.
My error came after running make install, the error is: make: *** [Makefile:7: install] Error 2

Here is my operation and related information:

(base) master@MasterComputer:~/Python/Madagascar/madagascar-4.0$ ./configure --prefix=/home/master/Python/Madagascar
checking for Python ... /home/master/anaconda3/bin/python
checking Python version ... 3.9.13
checking for RSFROOT ... /home/master/Python/Madagascar
checking for SCons ... /home/master/anaconda3/bin/scons
checking SCons version ... v4.4.0.fc8d0ec215ee6cba8bc158ad40c099be0b598297
Running RSFROOT=/home/master/Python/Madagascar /home/master/anaconda3/bin/scons  config ...

scons: Reading SConscript files ...
checking platform ... (cached) linux [ubuntu]
checking for C compiler ... (cached) gcc
checking if gcc works ... yes
checking if gcc accepts '-x c -std=gnu17 -Wall -pedantic' ... yes
checking for ar ... (cached) ar
checking for rpc ... no
checking complex support ... yes
checking for X11 headers ... /usr/include
checking for X11 libraries ... /usr/lib/X11
checking for OpenGL ... yes
checking for sfpen ... (cached) xtpen
checking for ppm ... no

  Optional package: libnetpbm10-dev
checking for tiff ... no

  sfbyte2tif, sftif2byte, and tiffpen will not be built.

  Optional package: libtiff5-dev
checking for GD (PNG) ... no

  gdpen will not be built.
 
  Optional package: libgd-dev
checking for plplot ... no

  Optional package: libplplot-dev
checking for ffmpeg ... no

  Optional package: libavcodec-dev
checking for cairo (PNG) ... no

  Optional package: libcairo2-dev
checking for jpeg ... no

  sfbyte2jpg, sfjpg2byte, and jpegpen will not be built.

  Optional package: libjpeg-dev
checking for BLAS ... no

  Optional package: libblas-dev
checking for LAPACK ... no

  Optional package: liblapack-dev
checking for SWIG ... (cached) no

  Optional package: swig
checking for numpy ... (cached) yes
checking API options ... (cached) []
checking for C++ compiler ... (cached) g++
checking if g++ works ... yes
checking if g++ accepts '-std=gnu++17 -U__STRICT_ANSI__ -Wall -pedantic' ... yes
checking for MPICC ... (cached) /opt/nvidia/hpc_sdk/Linux_x86_64/23.1/comm_libs/mpi/bin/mpicc
checking if /opt/nvidia/hpc_sdk/Linux_x86_64/23.1/comm_libs/mpi/bin/mpicc works ... no

  Optional package: libopenmpi-dev
checking for MPICXX ... (cached) /opt/nvidia/hpc_sdk/Linux_x86_64/23.1/comm_libs/mpi/bin/mpicxx
checking if /opt/nvidia/hpc_sdk/Linux_x86_64/23.1/comm_libs/mpi/bin/mpicxx works ... no

  Optional package: libopenmpi-dev
checking for MPIRUN ... (cached) /opt/nvidia/hpc_sdk/Linux_x86_64/23.1/comm_libs/mpi/bin/mpirun
checking for Posix threads ... yes
checking for OpenMP ... yes
checking for CUDA ... (cached) /usr/local/cuda
checking if /opt/nvidia/hpc_sdk/Linux_x86_64/23.1/compilers/bin/nvcc works ... yes
checking for FFTW ... no

  Optional package: libfftw3-dev
checking for SuiteSparse ... no

  Optional package: libsuitesparse-dev

scons: *** Two environments with different actions were specified for the same target: sfpseudodepth
File "/home/master/Python/Madagascar/madagascar-4.0/build/user/xuxin/SConstruct", line 61, in <module>

Then

base) master@MasterComputer:~/Python/Madagascar/madagascar-4.0$ make install
RSFROOT=/home/master/Python/Madagascar PYTHONPATH=/home/master/Python/Madagascar/lib/python3.9/site-packages /home/master/anaconda3/bin/scons install
scons: Reading SConscript files ...

scons: *** Two environments with different actions were specified for the same target: sfpseudodepth
File "/home/master/Python/Madagascar/madagascar-4.0/build/user/xuxin/SConstruct", line 61, in <module>
make: *** [Makefile:7: install] Error 2

[zhangxiaoshuotttt]

I found the solution here #201

[zhangxiaoshuotttt]

But I get new error.
Can you help me to fix this? Thank you very much. @zhichenggeng @Dirack@andreigomesoliveira

(base) master@MasterComputer:~/Python/Madagascar/madagascar-4.0$ scons install
scons: Reading SConscript files ...
scons: done reading SConscript files.
scons: Building targets ...
__header(["build/api/c/alloc.h"], ["build/api/c/alloc.c"])
__header(["build/api/c/getpar.h"], ["build/api/c/getpar.c"])
__header(["build/api/c/blas.h"], ["build/api/c/blas.c"])
__header(["build/api/c/chain.h"], ["build/api/c/chain.c"])
__header(["build/api/c/box.h"], ["build/api/c/box.c"])
__header(["build/api/c/butter.h"], ["build/api/c/butter.c"])
__header(["build/api/c/causint.h"], ["build/api/c/causint.c"])
__header(["build/api/c/cdstep.h"], ["build/api/c/cdstep.c"])
__header(["build/api/c/clist.h"], ["build/api/c/clist.c"])
__header(["build/api/c/ccgstep.h"], ["build/api/c/ccgstep.c"])
__header(["build/api/c/cconjgrad.h"], ["build/api/c/cconjgrad.c"])
__header(["build/api/c/ccopy.h"], ["build/api/c/ccopy.c"])
__header(["build/api/c/quadratic.h"], ["build/api/c/quadratic.c"])
__header(["build/api/c/eno2.h"], ["build/api/c/eno2.c"])
__header(["build/api/c/lsint2.h"], ["build/api/c/lsint2.c"])
__header(["build/api/c/cmatmult.h"], ["build/api/c/cmatmult.c"])
__header(["build/api/c/conjgrad.h"], ["build/api/c/conjgrad.c"])
__header(["build/api/c/conjprec.h"], ["build/api/c/conjprec.c"])
__header(["build/api/c/copy.h"], ["build/api/c/copy.c"])
__header(["build/api/c/cosft.h"], ["build/api/c/cosft.c"])
__header(["build/api/c/ctriangle.h"], ["build/api/c/ctriangle.c"])
__header(["build/api/c/weight.h"], ["build/api/c/weight.c"])
__header(["build/api/c/dtrianglen.h"], ["build/api/c/dtrianglen.c"])
__header(["build/api/c/fftlabel.h"], ["build/api/c/fftlabel.c"])
__header(["build/api/c/files.h"], ["build/api/c/files.c"])
__header(["build/api/c/freqfilt.h"], ["build/api/c/freqfilt.c"])
__header(["build/api/c/freqfilt2.h"], ["build/api/c/freqfilt2.c"])
__header(["build/api/c/ftutil.h"], ["build/api/c/ftutil.c"])
__header(["build/api/c/fzero.h"], ["build/api/c/fzero.c"])
__header(["build/api/c/gaussel.h"], ["build/api/c/gaussel.c"])
__header(["build/api/c/igrad2.h"], ["build/api/c/igrad2.c"])
__header(["build/api/c/halfint.h"], ["build/api/c/halfint.c"])
__header(["build/api/c/igrad1.h"], ["build/api/c/igrad1.c"])
__header(["build/api/c/int2.h"], ["build/api/c/int2.c"])
__header(["build/api/c/int3.h"], ["build/api/c/int3.c"])
__header(["build/api/c/mask.h"], ["build/api/c/mask.c"])
__header(["build/api/c/matmult2.h"], ["build/api/c/matmult2.c"])
__header(["build/api/c/repeat.h"], ["build/api/c/repeat.c"])
__header(["build/api/c/weight2.h"], ["build/api/c/weight2.c"])
__header(["build/api/c/sharpen.h"], ["build/api/c/sharpen.c"])
__header(["build/api/c/ntrianglen.h"], ["build/api/c/ntrianglen.c"])
__header(["build/api/c/point.h"], ["build/api/c/point.c"])
__header(["build/api/c/polydiv.h"], ["build/api/c/polydiv.c"])
__header(["build/api/c/recfilt.h"], ["build/api/c/recfilt.c"])
__header(["build/api/c/sharpinv.h"], ["build/api/c/sharpinv.c"])
__header(["build/api/c/slice.h"], ["build/api/c/slice.c"])
__header(["build/api/c/triangle2.h"], ["build/api/c/triangle2.c"])
__header(["build/api/c/spline.h"], ["build/api/c/spline.c"])
__header(["build/api/c/stretch4.h"], ["build/api/c/stretch4.c"])
__header(["build/api/c/tent2.h"], ["build/api/c/tent2.c"])
__header(["build/api/c/tinysolver.h"], ["build/api/c/tinysolver.c"])
__header(["build/api/c/triangle1.h"], ["build/api/c/triangle1.c"])
__header(["build/api/c/vector.h"], ["build/api/c/vector.c"])
__header(["build/api/c/wavelet.h"], ["build/api/c/wavelet.c"])
__header(["build/user/gee/mspef.h"], ["build/user/gee/mspef.c"])
__header(["build/user/gee/nmisinput.h"], ["build/user/gee/nmisinput.c"])
/opt/nvidia/hpc_sdk/Linux_x86_64/23.1/compilers/bin/nvcc -o build/user/cuda/gpuktmig.o -c --x=cu -Ibuild/include build/user/cuda/gpuktmig.c
build/user/cuda/ktmig.cu(56): error: texture is not a template

build/user/cuda/ktmig.cu(58): error: texture is not a template

build/user/cuda/ktmig.cu(60): error: texture is not a template

build/user/cuda/ktmig.cu(62): error: texture is not a template

build/user/cuda/ktmig.cu(64): error: texture is not a template

build/user/cuda/ktmig.cu(208): error: no instance of overloaded function "tex1Dfetch" matches the argument list
            argument types are: (<error-type>, int)

build/user/cuda/ktmig.cu(212): error: no instance of overloaded function "tex1Dfetch" matches the argument list
            argument types are: (<error-type>, int)

build/user/cuda/ktmig.cu(236): error: no instance of overloaded function "tex1Dfetch" matches the argument list
            argument types are: (<error-type>, unsigned int)

build/user/cuda/ktmig.cu(258): error: no instance of overloaded function "tex1Dfetch" matches the argument list
            argument types are: (<error-type>, <error-type>)

build/user/cuda/ktmig.cu(283): error: no instance of overloaded function "tex2D" matches the argument list
            argument types are: (<error-type>, float, float)

build/user/cuda/ktmig.cu(284): error: no instance of overloaded function "tex2D" matches the argument list
            argument types are: (<error-type>, float, float)

build/user/cuda/ktmig.cu(285): error: no instance of overloaded function "tex2D" matches the argument list
            argument types are: (<error-type>, float, float)

build/user/cuda/ktmig.cu(310): error: no instance of overloaded function "tex1Dfetch" matches the argument list
            argument types are: (<error-type>, unsigned int)

build/user/cuda/ktmig.cu(331): error: no instance of overloaded function "tex1Dfetch" matches the argument list
            argument types are: (<error-type>, <error-type>)

build/user/cuda/ktmig.cu(345): error: no instance of overloaded function "tex2D" matches the argument list
            argument types are: (<error-type>, float, float)

build/user/cuda/gpuktmig.c(291): error: identifier "cudaBindTextureToArray" is undefined

build/user/cuda/gpuktmig.c(302): error: identifier "cudaBindTexture" is undefined

build/user/cuda/gpuktmig.c(593): error: identifier "cudaUnbindTexture" is undefined

18 errors detected in the compilation of "build/user/cuda/gpuktmig.c".
scons: *** [build/user/cuda/gpuktmig.o] Error 2
scons: building terminated because of errors.

[sfomel]

Thank you for reporting these problems.

The first bug is fixed here: 6e65a81

We will make a new stable release (madagascar-4.1) with this and other bug fixes.

[zhangxiaoshuotttt]

Thank you for reporting these problems.

The first bug is fixed here: 6e65a81

We will make a new stable release (madagascar-4.1) with this and other bug fixes.

Thank you very much. At the same time, I would like to ask how to solve the problem related to CUDA that I encountered in the later installation. It seems that this problem makes me unable to install normally. I observed that the error seems to be due to some internal problems of this code.

What I want to ask is:

① Whether this problem can be solved

② Could you skip installing this "user/cuda"? (I don't know if this will affect the installation of Madagascar)

[sfomel]

We will check if the error is caused by a different version of nvcc.

Skipping user/cuda is easy: simply delete the whole directory.

To disable CUDA support in Madagascar, edit $RSFSRC/config.py and set

CUDA_TOOLKIT_PATH = None

[zhangxiaoshuotttt]

We will check if the error is caused by a different version of nvcc.

Skipping user/cuda is easy: simply delete the whole directory.

To disable CUDA support in Madagascar, edit $RSFSRC/config.py and set

CUDA_TOOLKIT_PATH = None

Thanks for your advice. I think your guess is correct, this is probably due to different nvcc versions, after I removed the 'usr' related to GPU, make and make install can be correctly.
I deleted the following three USRs, I hope it will be helpful for your test: "cuda","fomels","hwang"